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The map label for this gene is rlpA [C]

Identifier: 33863957

GI number: 33863957

Start: 1793089

End: 1793688

Strand: Reverse

Name: rlpA [C]

Synonym: PMT1690

Alternate gene names: 33863957

Gene position: 1793688-1793089 (Counterclockwise)

Preceding gene: 33863962

Following gene: 33863956

Centisome position: 74.4

GC content: 50.33

Gene sequence:

>600_bases
ATGAAATTTTCCGTTTCGCTTCTTGTTCTTGCTGGTGTTTGCTCCAGCAGTGCTGCACTTTTACCAGCCTTTGCCCTTGA
TCTTGATCTCGACAAAAAGGTCACCAGGGAACAGGTCAAGAAAGCTCTGCTTGAACGAATCTCGCTTTTTGCGACTCCTT
TGTCTGCCAATCAAGCCAGCTCAGATCAAGGCAGTGCTGAAGTCGCTACTGGTTTAACTGTTGATTCAGTTGTTGAGACA
CCACCAGCGTTGGCAATCGTTCCGGTTGCCAAGCTAAACAGACCTGTCAAGCCAACTCCCACTGTTGTTCAAGTGAGCAC
TGGTGAAGCAAGCTGGTACGGCCCGGGCTTCTTCGGAAACCGAACTGCAAGTGGTGAAGTTTTCAGGCCAGGCACAATGA
CAGCTGCTCATCGCAGCTTGCCTTTTGGTACCAAGGTAAGGGTGACCAACCTTTGGAATGATCGTTCTGCTGTTGTGACA
ATCAACGATCGCGGCCCTTTTATCGCTCATCGCGTCATCGATCTTGCTCATGGTGCTGCCCATGAGCTTGGTTTGATATC
GAGTGGTATTGCCCAAGTGCGTCTTGAGGTGCTGCGCTGA

Upstream 100 bases:

>100_bases
GAGGATGTAATTCGTACGGTTCTGGGAACTTTGGTTGGTTTAAGGACGTCTTCCTGCTGGGGATGATTTTTTCTCCTCAT
TCAAGTGTCGTCTGCTAGTA

Downstream 100 bases:

>100_bases
GTTTTTCTGTTCTCAGTTCAACGGCTGAGTTGCATCAATGGCGTAAGCATCAGCAGTCTTCGGTTCATTTCGTACCCACC
ATGGGCGCTTTGCACCGCGG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MKFSVSLLVLAGVCSSSAALLPAFALDLDLDKKVTREQVKKALLERISLFATPLSANQASSDQGSAEVATGLTVDSVVET
PPALAIVPVAKLNRPVKPTPTVVQVSTGEASWYGPGFFGNRTASGEVFRPGTMTAAHRSLPFGTKVRVTNLWNDRSAVVT
INDRGPFIAHRVIDLAHGAAHELGLISSGIAQVRLEVLR

Sequences:

>Translated_199_residues
MKFSVSLLVLAGVCSSSAALLPAFALDLDLDKKVTREQVKKALLERISLFATPLSANQASSDQGSAEVATGLTVDSVVET
PPALAIVPVAKLNRPVKPTPTVVQVSTGEASWYGPGFFGNRTASGEVFRPGTMTAAHRSLPFGTKVRVTNLWNDRSAVVT
INDRGPFIAHRVIDLAHGAAHELGLISSGIAQVRLEVLR
>Mature_199_residues
MKFSVSLLVLAGVCSSSAALLPAFALDLDLDKKVTREQVKKALLERISLFATPLSANQASSDQGSAEVATGLTVDSVVET
PPALAIVPVAKLNRPVKPTPTVVQVSTGEASWYGPGFFGNRTASGEVFRPGTMTAAHRSLPFGTKVRVTNLWNDRSAVVT
INDRGPFIAHRVIDLAHGAAHELGLISSGIAQVRLEVLR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=79, Percent_Identity=48.1012658227848, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 21038; Mature: 21038

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSVSLLVLAGVCSSSAALLPAFALDLDLDKKVTREQVKKALLERISLFATPLSANQAS
CCEEHEEHEEHHHHCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SDQGSAEVATGLTVDSVVETPPALAIVPVAKLNRPVKPTPTVVQVSTGEASWYGPGFFGN
CCCCCCCEECCCCHHHHHCCCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC
RTASGEVFRPGTMTAAHRSLPFGTKVRVTNLWNDRSAVVTINDRGPFIAHRVIDLAHGAA
CCCCCCEECCCCCCHHHHCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCH
HELGLISSGIAQVRLEVLR
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFSVSLLVLAGVCSSSAALLPAFALDLDLDKKVTREQVKKALLERISLFATPLSANQAS
CCEEHEEHEEHHHHCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SDQGSAEVATGLTVDSVVETPPALAIVPVAKLNRPVKPTPTVVQVSTGEASWYGPGFFGN
CCCCCCCEECCCCHHHHHCCCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC
RTASGEVFRPGTMTAAHRSLPFGTKVRVTNLWNDRSAVVTINDRGPFIAHRVIDLAHGAA
CCCCCCEECCCCCCHHHHCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCH
HELGLISSGIAQVRLEVLR
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]