Click here to switch to the map view.

The map label for this gene is fimZ [C]

Identifier: 33863922

GI number: 33863922

Start: 1761822

End: 1762109

Strand: Direct

Name: fimZ [C]

Synonym: PMT1655

Alternate gene names: 33863922

Gene position: 1761822-1762109 (Clockwise)

Preceding gene: 33863921

Following gene: 33863924

Centisome position: 73.08

GC content: 52.78

Gene sequence:

>288_bases
ATGCAGCCACAAAATCAATCAAACTCTTTTCCATTGCCTCCATCAGCTGGATCGCAACGACTAAGCCCAGCGGAGCAATC
CGTGGTGACGTTGTTGTTTGAGGGTCTCAGCAACAAAGCCATCGCACAAAGACTGATCCTTAGTCCACGAACCGTGGAAA
GTCACATCAGCCATGCCCTCGCCAAAACCGGCTGTCAAAGCCGACTCGAACTCACCTTGTGGCTGATTGCCAACTGTCAG
CCAGAAGCAGCCACCTCCGTCGTTACACTTCCAGGATTGCCGGCTTAG

Upstream 100 bases:

>100_bases
GCCAAGAGGCTGTCAGCAGCCAAGAATCCGTGTCAACTCCTGGAGCAATGGAATAGGGCGGAGAAGAGGGGGGAATCCTG
AAAGAAATTGCTTTGCTGCT

Downstream 100 bases:

>100_bases
CTCAGTGGTAGAGCAGCGCTTTTGTAAAGCGAAGGCCATCGGTTCAAATCCGTTAGCCGGCATTTCAGAAAGATGAATGT
CAACCAACTGCCAAGCTGCC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MQPQNQSNSFPLPPSAGSQRLSPAEQSVVTLLFEGLSNKAIAQRLILSPRTVESHISHALAKTGCQSRLELTLWLIANCQ
PEAATSVVTLPGLPA

Sequences:

>Translated_95_residues
MQPQNQSNSFPLPPSAGSQRLSPAEQSVVTLLFEGLSNKAIAQRLILSPRTVESHISHALAKTGCQSRLELTLWLIANCQ
PEAATSVVTLPGLPA
>Mature_95_residues
MQPQNQSNSFPLPPSAGSQRLSPAEQSVVTLLFEGLSNKAIAQRLILSPRTVESHISHALAKTGCQSRLELTLWLIANCQ
PEAATSVVTLPGLPA

Specific function: Unknown

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000767
- InterPro:   IPR016032
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 10116; Mature: 10116

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPQNQSNSFPLPPSAGSQRLSPAEQSVVTLLFEGLSNKAIAQRLILSPRTVESHISHAL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
AKTGCQSRLELTLWLIANCQPEAATSVVTLPGLPA
HHHCCCCHHEEEEEEEECCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MQPQNQSNSFPLPPSAGSQRLSPAEQSVVTLLFEGLSNKAIAQRLILSPRTVESHISHAL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
AKTGCQSRLELTLWLIANCQPEAATSVVTLPGLPA
HHHCCCCHHEEEEEEEECCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]