Click here to switch to the map view.

The map label for this gene is yifB [H]

Identifier: 33863865

GI number: 33863865

Start: 1697380

End: 1697961

Strand: Direct

Name: yifB [H]

Synonym: PMT1598

Alternate gene names: 33863865

Gene position: 1697380-1697961 (Clockwise)

Preceding gene: 33863864

Following gene: 33863866

Centisome position: 70.41

GC content: 56.53

Gene sequence:

>582_bases
TTGGGCCATAAAGCCCTTGCCTTGGCTGCCGCCGGGGGCCATCACCTCCTGATGGTGGGGCCACCTGGCTGTGGGAAAAC
CCTTTTGGCTCAACATTTAGCCCAGCTGCTGCAGCCGCTCACGCGCCAAGAGGCCTTGGAAATCAACAGTATTAACTCTG
TGGCAGGAATGCTGAAGAGCACTCCCCAGTCAATAGAACAGCGACCCTTCCGGGCTCCCCATCACAGTTGCACGATTGCT
GCACTCGTTGGAGGCGGTGCAAACCCCAGGCCCGGAGAACTGAGCCTCGCCCATGGTGGTGTGTTGTTTCTCGATGAACT
AGCTGAATTTCCATGCAAAGTTCTCGACCAACTTCGACAACCACTCGAGGAAGGAGTCATTCGTCTGAATCGAGCCAGCA
GACATGTGCCTTCCCTGCTCAAATCACCCTTGTTGCAGCAACCAATCCCTGCCCATGCGGGTGGTTTGGAGATGAAGAGC
ATCCTTGCCGCTGTAGCCAATCCCAACGCCAGCGGTATTGGAGCCGCCTCTCTGGACCCTTATTGGATCGCCTGGATCTA
CACCTGCGTCTCAAGCACCTAG

Upstream 100 bases:

>100_bases
ACCCCAACCACTAGCACCTAAACACATCTCCAAAGCGGCCGTCACGGCAAAAATCACGCGCAGACCAAACGATCAACTTC
ATCCACTGCTTGGTTGCGCC

Downstream 100 bases:

>100_bases
CCGCAGCTCAGCTGCGCAAATCGGTTACCGGCTTCACTCCCACTGATCTCAATGATCAAGAGTTAATAGACATCGAGTAG
ATCTTGCGCGCGCGCACGCG

Product: ATPase AAA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MGHKALALAAAGGHHLLMVGPPGCGKTLLAQHLAQLLQPLTRQEALEINSINSVAGMLKSTPQSIEQRPFRAPHHSCTIA
ALVGGGANPRPGELSLAHGGVLFLDELAEFPCKVLDQLRQPLEEGVIRLNRASRHVPSLLKSPLLQQPIPAHAGGLEMKS
ILAAVANPNASGIGAASLDPYWIAWIYTCVSST

Sequences:

>Translated_193_residues
MGHKALALAAAGGHHLLMVGPPGCGKTLLAQHLAQLLQPLTRQEALEINSINSVAGMLKSTPQSIEQRPFRAPHHSCTIA
ALVGGGANPRPGELSLAHGGVLFLDELAEFPCKVLDQLRQPLEEGVIRLNRASRHVPSLLKSPLLQQPIPAHAGGLEMKS
ILAAVANPNASGIGAASLDPYWIAWIYTCVSST
>Mature_192_residues
GHKALALAAAGGHHLLMVGPPGCGKTLLAQHLAQLLQPLTRQEALEINSINSVAGMLKSTPQSIEQRPFRAPHHSCTIAA
LVGGGANPRPGELSLAHGGVLFLDELAEFPCKVLDQLRQPLEEGVIRLNRASRHVPSLLKSPLLQQPIPAHAGGLEMKSI
LAAVANPNASGIGAASLDPYWIAWIYTCVSST

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=131, Percent_Identity=54.1984732824427, Blast_Score=140, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 20311; Mature: 20180

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHKALALAAAGGHHLLMVGPPGCGKTLLAQHLAQLLQPLTRQEALEINSINSVAGMLKS
CCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPQSIEQRPFRAPHHSCTIAALVGGGANPRPGELSLAHGGVLFLDELAEFPCKVLDQLRQ
CHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCHHHHHHHHCHHHHHHHHHH
PLEEGVIRLNRASRHVPSLLKSPLLQQPIPAHAGGLEMKSILAAVANPNASGIGAASLDP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
YWIAWIYTCVSST
HHHHHHHHHHHCC
>Mature Secondary Structure 
GHKALALAAAGGHHLLMVGPPGCGKTLLAQHLAQLLQPLTRQEALEINSINSVAGMLKS
CCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPQSIEQRPFRAPHHSCTIAALVGGGANPRPGELSLAHGGVLFLDELAEFPCKVLDQLRQ
CHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCHHHHHHHHCHHHHHHHHHH
PLEEGVIRLNRASRHVPSLLKSPLLQQPIPAHAGGLEMKSILAAVANPNASGIGAASLDP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
YWIAWIYTCVSST
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]