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The map label for this gene is ycbY [C]

Identifier: 33863845

GI number: 33863845

Start: 1677975

End: 1679099

Strand: Direct

Name: ycbY [C]

Synonym: PMT1578

Alternate gene names: 33863845

Gene position: 1677975-1679099 (Clockwise)

Preceding gene: 33863842

Following gene: 33863850

Centisome position: 69.6

GC content: 56.27

Gene sequence:

>1125_bases
ATGCAAGCGATCGCCGTACTCCCCCAAGGATTAGAAGAAGAAGGCGCCAAAGAACTCAGCACTCTTGGGGCAAAAGCCGT
GCGCCCACTCAGACGCGCTGCGGCGTTTGAAGCCGACATGGCCTGCTTTTATCGGCTGCATCTACAAGCGCGCCTGCCAT
TTCGCCTGCTCAGGGAGATTGCCCAATTCCCTTGCCAAGGGCCAAAAGAGCTCTACTCAGGTGTGCAATCAGCCTTCGAC
TGGGAACGCTGGCTGCATCCATCAATGAGCTTTCGTGTCGATGTCACCGGCAGCGGCCCTGGCCTCACTCACAGCCACTT
CACAGCCCTGCAGGTAAAAAACGCCCTCGTTGATCTGCAACGGCAGCTATGGGGTGAGCGATCTGATATCGATCTGCAAG
ACCCTGCTCTCTGCTTGCATCTCCATCTCAGTCGAGATTGTGCGGTCCTGAGCTTGGACGGTTCAGCTGGCAGCCTGCAC
CGCAGGGGCTACCGAGCTGCAGTTGGCGCTGCGCCTCTCAAAGAAAACCTTGCCGCCGGATTGATCAAACTCAGCGGCTG
GGATGGCTGCGTGCCCTTAGTTGACCCCCTGTGCGGATCAGGCACCCTGCTGATCGAGGCAGCCAGTATGAAGCTTGGCC
TTGCACCAGGGATACAGCGTTCCTTTCTCATGGAAGGTTGGGCAGATTTCAATCCTCAACTCTGGAGCGAGGAACAAGCA
CGAGCCAAGCAACGAGAACGCAGAGATCAATCGCTGCCAGTGATCATTGGTTGCGACCGAGACCCCAGCATCACAACACA
AGCAAAAACCAATGTTGCCGAGGCAGGCCTCGACCATGTTGTAGGCATTCAAACCTGTGATTTTCGCGACCTAGAACTGC
CAAAACAGCCAGGAGTAATGGTCTGCAACCCTCCCTATGGCATCCGAGTTGGCCAGGATGAAGACCTAACCGCTCTCTAT
GAAAGCCTCGGTCAATACGCCAAGCAATACGCATCAGGTTGGCAGCTATGGCTGCTGAACGGCAATCCCAGCCTCAGCCG
ATCACTACAGATGAAAGCGAGTCGGCGGATTCCAGTCAGCAATGGCGGCATCGAATGCCGCTGGCTGAACTACGCCATTC
GCTGA

Upstream 100 bases:

>100_bases
GACACTGGTGTGGATCACCTAGTCCGCCAAAAGGGGGACACTTCCATTCTGACAGGAATGCTGTTCTGTCGCTCAACAAC
CCTTGGGGTGTAAAAGCTCA

Downstream 100 bases:

>100_bases
ACCGCAGGGAAACTTGATCTATCAGCAGCAATCTTCGGATTCACGGCACTTTTTACCGGCTCTAATCATCCAATAATAAC
CACGAAGTATCAAAGAAAAC

Product: RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MQAIAVLPQGLEEEGAKELSTLGAKAVRPLRRAAAFEADMACFYRLHLQARLPFRLLREIAQFPCQGPKELYSGVQSAFD
WERWLHPSMSFRVDVTGSGPGLTHSHFTALQVKNALVDLQRQLWGERSDIDLQDPALCLHLHLSRDCAVLSLDGSAGSLH
RRGYRAAVGAAPLKENLAAGLIKLSGWDGCVPLVDPLCGSGTLLIEAASMKLGLAPGIQRSFLMEGWADFNPQLWSEEQA
RAKQRERRDQSLPVIIGCDRDPSITTQAKTNVAEAGLDHVVGIQTCDFRDLELPKQPGVMVCNPPYGIRVGQDEDLTALY
ESLGQYAKQYASGWQLWLLNGNPSLSRSLQMKASRRIPVSNGGIECRWLNYAIR

Sequences:

>Translated_374_residues
MQAIAVLPQGLEEEGAKELSTLGAKAVRPLRRAAAFEADMACFYRLHLQARLPFRLLREIAQFPCQGPKELYSGVQSAFD
WERWLHPSMSFRVDVTGSGPGLTHSHFTALQVKNALVDLQRQLWGERSDIDLQDPALCLHLHLSRDCAVLSLDGSAGSLH
RRGYRAAVGAAPLKENLAAGLIKLSGWDGCVPLVDPLCGSGTLLIEAASMKLGLAPGIQRSFLMEGWADFNPQLWSEEQA
RAKQRERRDQSLPVIIGCDRDPSITTQAKTNVAEAGLDHVVGIQTCDFRDLELPKQPGVMVCNPPYGIRVGQDEDLTALY
ESLGQYAKQYASGWQLWLLNGNPSLSRSLQMKASRRIPVSNGGIECRWLNYAIR
>Mature_374_residues
MQAIAVLPQGLEEEGAKELSTLGAKAVRPLRRAAAFEADMACFYRLHLQARLPFRLLREIAQFPCQGPKELYSGVQSAFD
WERWLHPSMSFRVDVTGSGPGLTHSHFTALQVKNALVDLQRQLWGERSDIDLQDPALCLHLHLSRDCAVLSLDGSAGSLH
RRGYRAAVGAAPLKENLAAGLIKLSGWDGCVPLVDPLCGSGTLLIEAASMKLGLAPGIQRSFLMEGWADFNPQLWSEEQA
RAKQRERRDQSLPVIIGCDRDPSITTQAKTNVAEAGLDHVVGIQTCDFRDLELPKQPGVMVCNPPYGIRVGQDEDLTALY
ESLGQYAKQYASGWQLWLLNGNPSLSRSLQMKASRRIPVSNGGIECRWLNYAIR

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=357, Percent_Identity=33.6134453781513, Blast_Score=203, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 41255; Mature: 41255

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAIAVLPQGLEEEGAKELSTLGAKAVRPLRRAAAFEADMACFYRLHLQARLPFRLLREI
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AQFPCQGPKELYSGVQSAFDWERWLHPSMSFRVDVTGSGPGLTHSHFTALQVKNALVDLQ
HHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
RQLWGERSDIDLQDPALCLHLHLSRDCAVLSLDGSAGSLHRRGYRAAVGAAPLKENLAAG
HHHCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHCCCHHHHCCCCHHHHHHHC
LIKLSGWDGCVPLVDPLCGSGTLLIEAASMKLGLAPGIQRSFLMEGWADFNPQLWSEEQA
EEEECCCCCCHHHHCCCCCCCEEEEEEECCEECCCCCHHHHHHHHCCCCCCCCCCCHHHH
RAKQRERRDQSLPVIIGCDRDPSITTQAKTNVAEAGLDHVVGIQTCDFRDLELPKQPGVM
HHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCHHHEEECEECCCCCCCCCCCCCEE
VCNPPYGIRVGQDEDLTALYESLGQYAKQYASGWQLWLLNGNPSLSRSLQMKASRRIPVS
EECCCCCEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCC
NGGIECRWLNYAIR
CCCEEEEEEEEECC
>Mature Secondary Structure
MQAIAVLPQGLEEEGAKELSTLGAKAVRPLRRAAAFEADMACFYRLHLQARLPFRLLREI
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AQFPCQGPKELYSGVQSAFDWERWLHPSMSFRVDVTGSGPGLTHSHFTALQVKNALVDLQ
HHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
RQLWGERSDIDLQDPALCLHLHLSRDCAVLSLDGSAGSLHRRGYRAAVGAAPLKENLAAG
HHHCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHCCCHHHHCCCCHHHHHHHC
LIKLSGWDGCVPLVDPLCGSGTLLIEAASMKLGLAPGIQRSFLMEGWADFNPQLWSEEQA
EEEECCCCCCHHHHCCCCCCCEEEEEEECCEECCCCCHHHHHHHHCCCCCCCCCCCHHHH
RAKQRERRDQSLPVIIGCDRDPSITTQAKTNVAEAGLDHVVGIQTCDFRDLELPKQPGVM
HHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCHHHEEECEECCCCCCCCCCCCCEE
VCNPPYGIRVGQDEDLTALYESLGQYAKQYASGWQLWLLNGNPSLSRSLQMKASRRIPVS
EECCCCCEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCC
NGGIECRWLNYAIR
CCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]