| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is 33863844
Identifier: 33863844
GI number: 33863844
Start: 1676437
End: 1677201
Strand: Reverse
Name: 33863844
Synonym: PMT1577
Alternate gene names: NA
Gene position: 1677201-1676437 (Counterclockwise)
Preceding gene: 33863846
Following gene: 33863843
Centisome position: 69.57
GC content: 44.31
Gene sequence:
>765_bases ATGACAGCTTCTAATCTTGAAGTGAATCACCAGGAGAAAGTCGACACGCTCAAGCACTACTCAGTCTGCATCTGCAAAGC CGGTTCCACTGAGTTCATGAAGGGCCAGTCCGTCGCGCAGAAGATGTACAACAAAGCTTGGAACACTGAATCATACCTAT CCAAAGGAGCCTATGCAGTCGTCATATTCATGAGGAAAAATGGAGAATGGAATCCGATTGCCAATTTGAACTGCGCTCTC AAAAATTCAAACAACAAATTGCCATGTGAGCAGATATTTGGAGAACGTAATTGTGAAGCAGCAGGAGTGGAAGACGAAAC TCAAATTGCAGAGATCTGTGGTCTTGCTATTGATGATGCGACACCTACAGAAATGCGGAGGGCCGTATTAATGATGCTCA GCATGGGACTGCAGTCCATAGCTATGCATACCAAAATTCGTTGGGTACTTACAGTACAACACGAGTTTCTGATCCGAATT CTCAAAGAGTCTCTAGGGTTGCCCTTCATGAAAACAGCATCAGAGGTAGACAAAAAGGTATCGCTGCCAAAAGACGAATA CTGGAGCAGAAACGTCATGCCCCGTCTATATCTGCTTGACAGCCACCATCAAGCTACACGCGCGGCATGCGAAAGTTACT TCTACTACTTAAGCAGCCTGAATATTACACTCCAAATCAGAAATTCAGTTGGCATAACCCATCAAAGCTACTCTGGGTTT AAACGCCAATGGCAGAATATGAAAACAACTATAGCCATTAACTGA
Upstream 100 bases:
>100_bases ATAGAGGTGCTTGTGAGCAAGATCACAGGGCACCATGATCGCGATCATGGAGAGAACGAAACCACGAAAATAGTGTGATC TCATTGTTATACAACCAGCA
Downstream 100 bases:
>100_bases AGCCAATAAATTACCACCAATCAACCTGGCTCAGACAGGGAAAACCTCTAATCGATTTAGGCAATGTCAACTAGTTTAGT CGCATCAACTCATCAGCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MTASNLEVNHQEKVDTLKHYSVCICKAGSTEFMKGQSVAQKMYNKAWNTESYLSKGAYAVVIFMRKNGEWNPIANLNCAL KNSNNKLPCEQIFGERNCEAAGVEDETQIAEICGLAIDDATPTEMRRAVLMMLSMGLQSIAMHTKIRWVLTVQHEFLIRI LKESLGLPFMKTASEVDKKVSLPKDEYWSRNVMPRLYLLDSHHQATRAACESYFYYLSSLNITLQIRNSVGITHQSYSGF KRQWQNMKTTIAIN
Sequences:
>Translated_254_residues MTASNLEVNHQEKVDTLKHYSVCICKAGSTEFMKGQSVAQKMYNKAWNTESYLSKGAYAVVIFMRKNGEWNPIANLNCAL KNSNNKLPCEQIFGERNCEAAGVEDETQIAEICGLAIDDATPTEMRRAVLMMLSMGLQSIAMHTKIRWVLTVQHEFLIRI LKESLGLPFMKTASEVDKKVSLPKDEYWSRNVMPRLYLLDSHHQATRAACESYFYYLSSLNITLQIRNSVGITHQSYSGF KRQWQNMKTTIAIN >Mature_253_residues TASNLEVNHQEKVDTLKHYSVCICKAGSTEFMKGQSVAQKMYNKAWNTESYLSKGAYAVVIFMRKNGEWNPIANLNCALK NSNNKLPCEQIFGERNCEAAGVEDETQIAEICGLAIDDATPTEMRRAVLMMLSMGLQSIAMHTKIRWVLTVQHEFLIRIL KESLGLPFMKTASEVDKKVSLPKDEYWSRNVMPRLYLLDSHHQATRAACESYFYYLSSLNITLQIRNSVGITHQSYSGFK RQWQNMKTTIAIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28949; Mature: 28818
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASNLEVNHQEKVDTLKHYSVCICKAGSTEFMKGQSVAQKMYNKAWNTESYLSKGAYAV CCCCCCCCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEE VIFMRKNGEWNPIANLNCALKNSNNKLPCEQIFGERNCEAAGVEDETQIAEICGLAIDDA EEEEECCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCC TPTEMRRAVLMMLSMGLQSIAMHTKIRWVLTVQHEFLIRILKESLGLPFMKTASEVDKKV CHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHC SLPKDEYWSRNVMPRLYLLDSHHQATRAACESYFYYLSSLNITLQIRNSVGITHQSYSGF CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHH KRQWQNMKTTIAIN HHHHHCCCEEEEEC >Mature Secondary Structure TASNLEVNHQEKVDTLKHYSVCICKAGSTEFMKGQSVAQKMYNKAWNTESYLSKGAYAV CCCCCCCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEE VIFMRKNGEWNPIANLNCALKNSNNKLPCEQIFGERNCEAAGVEDETQIAEICGLAIDDA EEEEECCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCC TPTEMRRAVLMMLSMGLQSIAMHTKIRWVLTVQHEFLIRILKESLGLPFMKTASEVDKKV CHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHC SLPKDEYWSRNVMPRLYLLDSHHQATRAACESYFYYLSSLNITLQIRNSVGITHQSYSGF CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHH KRQWQNMKTTIAIN HHHHHCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA