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The map label for this gene is ycfH [C]

Identifier: 33863775

GI number: 33863775

Start: 1596835

End: 1597668

Strand: Reverse

Name: ycfH [C]

Synonym: PMT1508

Alternate gene names: 33863775

Gene position: 1597668-1596835 (Counterclockwise)

Preceding gene: 33863776

Following gene: 33863774

Centisome position: 66.27

GC content: 54.32

Gene sequence:

>834_bases
ATGAGGAAAGGACTCCACAATGGGGCCAAAGATGCGTTTTCGGTTCTGGTGTCGTCTCCGATTTTTATCGATAGTCATTG
TCACATCGTCTTTCGCAATTTCGATGATGATCTCGATGAGGTAGCTGAACGCTGGCGACAGGCGGGCGTAGCGAGTCTGC
TGCATGCGTGCGTGGAACCCGCAGAGATTCCTGCGATTCGTGCTTTGGCGGATCGTTTCCCTGAACTGCGCTATTCAGTG
GGGGTTCATCCCCTCGACACGCAGCACTGGAATCCTCAGACGCAGTCGCTGTTGCGAGATGCAGCTCTTGAAGATCCAAG
GGTGGTGGCTATTGGTGAACTGGGGCTTGATCTTTACCGGGATTCAAATCTTGAACAGCAGTTGGCTGTGCTGAGACCGC
AGTTGGACTTGGCCACGGAGTTAGATCTACCCGTGATCATTCATTGTCGTGATGCATTTGATCCCATGACGTTGGAGTTG
CGTCAGCGTCAGAAGGAGGGTCGTTGCCCTAGGGGGGTGATGCATTGCTGGGGCGGCACACCAGAGGATATGGAGGTCTG
CTTGGATCTTGGTCTTTACATCAGTTTCAGTGGCACAGTCACCTTCCCGAAGGCTGAGGCCATTCACGCCTGCGCGCGCG
AAGTTCCGCAGAATCGTTTTCTAGTCGAGACGGATTGTCCGTTTCTGGCTCCAGTGCCTCGTAGGGGTAAGCGCAATGAG
CCTGCCTACGTCGAAGCTGTGGCTTCTCGGGTGGCTGAGCTTCGAGGGGAGTCTTTGGCCTTCGTTGCAAGCAGTAGCAC
GGCTAATGCAAGACGATTGTTTTCTTTGCCCTGA

Upstream 100 bases:

>100_bases
CTCGTCTTAGTGCAGCGGTGAAGCAGGCGATTGAACCGGCGCCAAGCACTTAGGACAGATTTGCCATGGTCCATTTTGAA
AGGGCTTGTTCTTTCCCTTG

Downstream 100 bases:

>100_bases
TCTCAAGACATTGGACAGGCGTTTGGCGGTCTACAAGTGTAAAATTATTGACTGGTCTGGCCATGATGCAGTTCTTCTGC
GTCCCTGCCGCCCGAAGCGC

Product: TatD family deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MRKGLHNGAKDAFSVLVSSPIFIDSHCHIVFRNFDDDLDEVAERWRQAGVASLLHACVEPAEIPAIRALADRFPELRYSV
GVHPLDTQHWNPQTQSLLRDAALEDPRVVAIGELGLDLYRDSNLEQQLAVLRPQLDLATELDLPVIIHCRDAFDPMTLEL
RQRQKEGRCPRGVMHCWGGTPEDMEVCLDLGLYISFSGTVTFPKAEAIHACAREVPQNRFLVETDCPFLAPVPRRGKRNE
PAYVEAVASRVAELRGESLAFVASSSTANARRLFSLP

Sequences:

>Translated_277_residues
MRKGLHNGAKDAFSVLVSSPIFIDSHCHIVFRNFDDDLDEVAERWRQAGVASLLHACVEPAEIPAIRALADRFPELRYSV
GVHPLDTQHWNPQTQSLLRDAALEDPRVVAIGELGLDLYRDSNLEQQLAVLRPQLDLATELDLPVIIHCRDAFDPMTLEL
RQRQKEGRCPRGVMHCWGGTPEDMEVCLDLGLYISFSGTVTFPKAEAIHACAREVPQNRFLVETDCPFLAPVPRRGKRNE
PAYVEAVASRVAELRGESLAFVASSSTANARRLFSLP
>Mature_277_residues
MRKGLHNGAKDAFSVLVSSPIFIDSHCHIVFRNFDDDLDEVAERWRQAGVASLLHACVEPAEIPAIRALADRFPELRYSV
GVHPLDTQHWNPQTQSLLRDAALEDPRVVAIGELGLDLYRDSNLEQQLAVLRPQLDLATELDLPVIIHCRDAFDPMTLEL
RQRQKEGRCPRGVMHCWGGTPEDMEVCLDLGLYISFSGTVTFPKAEAIHACAREVPQNRFLVETDCPFLAPVPRRGKRNE
PAYVEAVASRVAELRGESLAFVASSSTANARRLFSLP

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=29.6992481203008, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=29.6992481203008, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061853, Length=274, Percent_Identity=29.5620437956204, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI226061614, Length=254, Percent_Identity=28.740157480315, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI14042943, Length=268, Percent_Identity=27.2388059701493, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903439, Length=225, Percent_Identity=28.4444444444444, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI225903424, Length=275, Percent_Identity=26.9090909090909, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI226061595, Length=231, Percent_Identity=29.004329004329, Blast_Score=76, Evalue=3e-14,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=38.6973180076628, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=32.9501915708812, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI87082439, Length=259, Percent_Identity=32.4324324324324, Blast_Score=130, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17559024, Length=283, Percent_Identity=28.6219081272085, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=269, Percent_Identity=26.7657992565056, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=301, Percent_Identity=25.2491694352159, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=31.1418685121107, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI221330018, Length=227, Percent_Identity=30.8370044052863, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24586117, Length=217, Percent_Identity=31.3364055299539, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30917; Mature: 30917

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKGLHNGAKDAFSVLVSSPIFIDSHCHIVFRNFDDDLDEVAERWRQAGVASLLHACVEP
CCCCCCCCHHHHHHHHHCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
AEIPAIRALADRFPELRYSVGVHPLDTQHWNPQTQSLLRDAALEDPRVVAIGELGLDLYR
HHCHHHHHHHHHCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHC
DSNLEQQLAVLRPQLDLATELDLPVIIHCRDAFDPMTLELRQRQKEGRCPRGVMHCWGGT
CCCHHHHHHHHCCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHCCCC
PEDMEVCLDLGLYISFSGTVTFPKAEAIHACAREVPQNRFLVETDCPFLAPVPRRGKRNE
CHHHHHHHHHCEEEEECCEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCC
PAYVEAVASRVAELRGESLAFVASSSTANARRLFSLP
CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRKGLHNGAKDAFSVLVSSPIFIDSHCHIVFRNFDDDLDEVAERWRQAGVASLLHACVEP
CCCCCCCCHHHHHHHHHCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
AEIPAIRALADRFPELRYSVGVHPLDTQHWNPQTQSLLRDAALEDPRVVAIGELGLDLYR
HHCHHHHHHHHHCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHC
DSNLEQQLAVLRPQLDLATELDLPVIIHCRDAFDPMTLELRQRQKEGRCPRGVMHCWGGT
CCCHHHHHHHHCCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHCCCC
PEDMEVCLDLGLYISFSGTVTFPKAEAIHACAREVPQNRFLVETDCPFLAPVPRRGKRNE
CHHHHHHHHHCEEEEECCEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCC
PAYVEAVASRVAELRGESLAFVASSSTANARRLFSLP
CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]