| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is gsiB [H]
Identifier: 33863416
GI number: 33863416
Start: 1233653
End: 1235242
Strand: Direct
Name: gsiB [H]
Synonym: PMT1145
Alternate gene names: 33863416
Gene position: 1233653-1235242 (Clockwise)
Preceding gene: 33863415
Following gene: 33863417
Centisome position: 51.17
GC content: 56.92
Gene sequence:
>1590_bases GTGTCAAGCTCTGGCCGTCGTGATTCTCTGCTCTGGGCCGCTGCTCTATTTGCTTGCTCCCTAGCGCTGAGCCAGGTTGC CTGTCAGCCGCCTCGCCGTAGTGAGCGACTTGTCGTGGCCAGTGCCGGCAAGATCACCTCTCTCGATCCTGCCCAGGCCA GTACTTTTGATGCTCTGCAACTGTTGAGCGCCCTCGGAGAGCCCCTCTACCAACTTGATCACAAAGGGGAGCTAGAGCCA CGACTGGCATCCGCCCCACCTCAGATAAGTGATGGCGGCTTCACCATCTCGATCCCTCTGCGCAGGGATGTGCTGTTTCA CGACGGCACCCAATTCAACGCCGCCGCGATGGCCTTCAGCCTGCGGCGATTTCTGAGTATCGGCACCCTCAACTACGTGG TAGGAGGACGGATTGCCGCCGTGGAGACAGCCGGTCCCTACCTGCTACGCCTTCGACTAACACGACCCTCAACTTCTCTA GAGGGACTACTCAGCTCAATCAATCTGACGCCGGTATCACCAACGGCCTACGCCAAGCACAGAGATCAGTTCCTCAATAA GCAATTCATTGGAACCGGCCCTTACCGACTCACTAGCTTCCAGACCCAGCAACAACGCCTTGAGCCTTTTCAGCAGTACT GGAGTACCCAGGCCAGTAATGCTGGAATCGATTTCATCAATCTGAGCAACTCCACGGCCCTATTCGGTGCCCTACGAAGC GGTGAAGTGGATGTACTCCTTTCCAATTCTCTGGATGAAGACCAACGCCTTGCCCTCCATCGCCTTGCCAAGCAAGGGAA GCTCCGCGAAGGAGAGGGACCAGCACTTGAGATCGGCTACATCACTCTCCTGAGTAATGCCCCTCCACTCAATCAACCCC TCTTACGTCAGGCCCTCGCCTACAGCCTCGACCGTCAGCTGATGGTGAAGCGCGTGAGCTATGGACTAAGACGCCCGCTG CGGTCTTTAGTGCCGCCAAACTTGCAGGCTGAACCACTCACACCTTGGCCCAGCTACAACCCTCAACGAGCCAAACAGCT GCTGAAAAAGGCAGGCTATTGCGGAACTCAAACGCTGACACTACCTTTTACTTTCCGTTCCAACGTGCCAGCAGACAAGT TATTGGCGCTTACATGGCAGGCACAGGTGGAACGTGATCTCTCGGATTGCCTGACACTGAAGCTCAATAGCGTCGAATCG ACCACCGTTTATCGCCAACTGGGGGAAGGCGCATTCCAGGCCGTCATCCTTGAGTGGCGAGGCGCCTATCCCGACCCGGA AGCCTATTTAGCTCCATTATTAAGCTGCAGCAAAGCCAATGGATCTGTATGCGAAGAAGGGGAAGCGGCAATTAGCGGCA GCTTCTGGACCGCAGATGGGCTGGAAACGAGCCTTCGCTACAGCGATGAACTTCGCGGACCCGATCGTCTCCACCAGCTC AGAGAGATCGAACGCTCCGCCGCCGGCGGAGCGGCCTATCTACCAATCTGGCTGGTAGCTCCACGAGCTTGGGCCCAGCG GCGGTTATCCAAACCAGAGTTTGACGGGAGCGGCCATTTAATGCTCCAGCATCTACGGGAGCTGCACTGA
Upstream 100 bases:
>100_bases GTTTGAAGTGTCGATACAACAAATCTCCTGCGCCTCCAAGTAAACAGAACGACACTCACTAGCAAGTCTTTAAATCAAGG CCATCCGATCCGCCCGCGTT
Downstream 100 bases:
>100_bases TGGGCCGCGGGAGAGAACTACTGCGCTACAGCTCGACCCGCTTGGCCCTGGCACCGGTGATGCTCTGGCTCATTGCCAGC ATGGTGTTTCTCCTCCTACG
Product: ABC transporter substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MSSSGRRDSLLWAAALFACSLALSQVACQPPRRSERLVVASAGKITSLDPAQASTFDALQLLSALGEPLYQLDHKGELEP RLASAPPQISDGGFTISIPLRRDVLFHDGTQFNAAAMAFSLRRFLSIGTLNYVVGGRIAAVETAGPYLLRLRLTRPSTSL EGLLSSINLTPVSPTAYAKHRDQFLNKQFIGTGPYRLTSFQTQQQRLEPFQQYWSTQASNAGIDFINLSNSTALFGALRS GEVDVLLSNSLDEDQRLALHRLAKQGKLREGEGPALEIGYITLLSNAPPLNQPLLRQALAYSLDRQLMVKRVSYGLRRPL RSLVPPNLQAEPLTPWPSYNPQRAKQLLKKAGYCGTQTLTLPFTFRSNVPADKLLALTWQAQVERDLSDCLTLKLNSVES TTVYRQLGEGAFQAVILEWRGAYPDPEAYLAPLLSCSKANGSVCEEGEAAISGSFWTADGLETSLRYSDELRGPDRLHQL REIERSAAGGAAYLPIWLVAPRAWAQRRLSKPEFDGSGHLMLQHLRELH
Sequences:
>Translated_529_residues MSSSGRRDSLLWAAALFACSLALSQVACQPPRRSERLVVASAGKITSLDPAQASTFDALQLLSALGEPLYQLDHKGELEP RLASAPPQISDGGFTISIPLRRDVLFHDGTQFNAAAMAFSLRRFLSIGTLNYVVGGRIAAVETAGPYLLRLRLTRPSTSL EGLLSSINLTPVSPTAYAKHRDQFLNKQFIGTGPYRLTSFQTQQQRLEPFQQYWSTQASNAGIDFINLSNSTALFGALRS GEVDVLLSNSLDEDQRLALHRLAKQGKLREGEGPALEIGYITLLSNAPPLNQPLLRQALAYSLDRQLMVKRVSYGLRRPL RSLVPPNLQAEPLTPWPSYNPQRAKQLLKKAGYCGTQTLTLPFTFRSNVPADKLLALTWQAQVERDLSDCLTLKLNSVES TTVYRQLGEGAFQAVILEWRGAYPDPEAYLAPLLSCSKANGSVCEEGEAAISGSFWTADGLETSLRYSDELRGPDRLHQL REIERSAAGGAAYLPIWLVAPRAWAQRRLSKPEFDGSGHLMLQHLRELH >Mature_528_residues SSSGRRDSLLWAAALFACSLALSQVACQPPRRSERLVVASAGKITSLDPAQASTFDALQLLSALGEPLYQLDHKGELEPR LASAPPQISDGGFTISIPLRRDVLFHDGTQFNAAAMAFSLRRFLSIGTLNYVVGGRIAAVETAGPYLLRLRLTRPSTSLE GLLSSINLTPVSPTAYAKHRDQFLNKQFIGTGPYRLTSFQTQQQRLEPFQQYWSTQASNAGIDFINLSNSTALFGALRSG EVDVLLSNSLDEDQRLALHRLAKQGKLREGEGPALEIGYITLLSNAPPLNQPLLRQALAYSLDRQLMVKRVSYGLRRPLR SLVPPNLQAEPLTPWPSYNPQRAKQLLKKAGYCGTQTLTLPFTFRSNVPADKLLALTWQAQVERDLSDCLTLKLNSVEST TVYRQLGEGAFQAVILEWRGAYPDPEAYLAPLLSCSKANGSVCEEGEAAISGSFWTADGLETSLRYSDELRGPDRLHQLR EIERSAAGGAAYLPIWLVAPRAWAQRRLSKPEFDGSGHLMLQHLRELH
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=359, Percent_Identity=28.4122562674095, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1789966, Length=467, Percent_Identity=23.7687366167024, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787762, Length=455, Percent_Identity=23.2967032967033, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1787551, Length=434, Percent_Identity=23.7327188940092, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1789887, Length=543, Percent_Identity=23.9410681399632, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787495, Length=457, Percent_Identity=23.1947483588621, Blast_Score=86, Evalue=8e-18, Organism=Escherichia coli, GI1789397, Length=464, Percent_Identity=24.3534482758621, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081878, Length=469, Percent_Identity=22.8144989339019, Blast_Score=80, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 58282; Mature: 58151
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSGRRDSLLWAAALFACSLALSQVACQPPRRSERLVVASAGKITSLDPAQASTFDALQ CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH LLSALGEPLYQLDHKGELEPRLASAPPQISDGGFTISIPLRRDVLFHDGTQFNAAAMAFS HHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECEECEEEECCCCCHHHHHHHH LRRFLSIGTLNYVVGGRIAAVETAGPYLLRLRLTRPSTSLEGLLSSINLTPVSPTAYAKH HHHHHHHCHHHHHHCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHH RDQFLNKQFIGTGPYRLTSFQTQQQRLEPFQQYWSTQASNAGIDFINLSNSTALFGALRS HHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEHEECCC GEVDVLLSNSLDEDQRLALHRLAKQGKLREGEGPALEIGYITLLSNAPPLNQPLLRQALA CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHH YSLDRQLMVKRVSYGLRRPLRSLVPPNLQAEPLTPWPSYNPQRAKQLLKKAGYCGTQTLT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE LPFTFRSNVPADKLLALTWQAQVERDLSDCLTLKLNSVESTTVYRQLGEGAFQAVILEWR EEEEECCCCCHHHHEEEHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCHHHEEEEEEEC GAYPDPEAYLAPLLSCSKANGSVCEEGEAAISGSFWTADGLETSLRYSDELRGPDRLHQL CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCEEECCCCHHHHCCCHHCCCHHHHHHH REIERSAAGGAAYLPIWLVAPRAWAQRRLSKPEFDGSGHLMLQHLRELH HHHHHHCCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure SSSGRRDSLLWAAALFACSLALSQVACQPPRRSERLVVASAGKITSLDPAQASTFDALQ CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH LLSALGEPLYQLDHKGELEPRLASAPPQISDGGFTISIPLRRDVLFHDGTQFNAAAMAFS HHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECEECEEEECCCCCHHHHHHHH LRRFLSIGTLNYVVGGRIAAVETAGPYLLRLRLTRPSTSLEGLLSSINLTPVSPTAYAKH HHHHHHHCHHHHHHCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHH RDQFLNKQFIGTGPYRLTSFQTQQQRLEPFQQYWSTQASNAGIDFINLSNSTALFGALRS HHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEHEECCC GEVDVLLSNSLDEDQRLALHRLAKQGKLREGEGPALEIGYITLLSNAPPLNQPLLRQALA CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHH YSLDRQLMVKRVSYGLRRPLRSLVPPNLQAEPLTPWPSYNPQRAKQLLKKAGYCGTQTLT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE LPFTFRSNVPADKLLALTWQAQVERDLSDCLTLKLNSVESTTVYRQLGEGAFQAVILEWR EEEEECCCCCHHHHEEEHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCHHHEEEEEEEC GAYPDPEAYLAPLLSCSKANGSVCEEGEAAISGSFWTADGLETSLRYSDELRGPDRLHQL CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCEEECCCCHHHHCCCHHCCCHHHHHHH REIERSAAGGAAYLPIWLVAPRAWAQRRLSKPEFDGSGHLMLQHLRELH HHHHHHCCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA