| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is phoB [H]
Identifier: 33863265
GI number: 33863265
Start: 1072591
End: 1073328
Strand: Direct
Name: phoB [H]
Synonym: PMT0994
Alternate gene names: 33863265
Gene position: 1072591-1073328 (Clockwise)
Preceding gene: 33863264
Following gene: 33863266
Centisome position: 44.49
GC content: 40.65
Gene sequence:
>738_bases ATGACTGTTGCACCTCCAAAGGTCATACCTCCTCAGTCATTGAAGGTTTTCCGATTGCTTGTTGTTGAAGACGATGACGC GATTCGAGAAACTATTGGCGAGGCTTTGTGTGCTGAGGGTTTTGAAACTATATTGTGTGGAGATGGATTCGAAGCTGTTT CGATCCTTACAAGTCAACCGAGACATAAATTTGATCTAATTATTTTAGATGTGATGCTCCCTGGCATTGGTGGTCTAGAT ATTTGTCGAAGATTGAGAGAATTTGATCCTAAAACACGCATATTCATGATCAGTGCTCGAGATAATGAAATCGATCGTGT TTTGGGGCTTGAGGTTGGAGCTGATGATTACCTAGTTAAACCATTTAGCGTTAGAGAACTTGTTGCACGTTGTCGAGCAC AATTACGTCGTTATCAGGAACGATCTGACGATTCAAATGCAAAAATGATTGAATATGGGAATTTATGTTTATACATTGAA GAATGTAGAGTCACCAAGGATGGAAAAGATCTAAGCCTTGCTCCAAAGGAGTATAAAATATTAAAGTTATTACTAGAACA CCCAAGACAGGTCCTGAGCCGAGATCAGATTCTTGAGCGAATATGGGGTGATGATTATTTTGGCGATACCAAAACTGTAG ACGTACACATTCGGTGGATAAGAGAAAAGATTGAGCAGGACCCTTCATCCCCTCAGTGCATCCATACTGTGAGAGGATTT GGTTATCGCTTTGGGTAA
Upstream 100 bases:
>100_bases TGAGTGATGAGGCTCAGGCGCAAGCTGATGGTTTGGGCTTTGTCCCCCTTCAGGGTGAAATTCGCTCCAAGGCTCGAGCA GCAGTTGAAAAGGTCGGCAA
Downstream 100 bases:
>100_bases TATTGATCTTGTATTTTTCTCTGATTTATCTTAGGATTCTCAATTGGTATCGCCACAAGGCAAAACTTGCCAAGGAAATT ACTTAAAGAAAAATACATCT
Product: two-component response regulator, phosphate
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTVAPPKVIPPQSLKVFRLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVMLPGIGGLD ICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLRRYQERSDDSNAKMIEYGNLCLYIE ECRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQILERIWGDDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGF GYRFG
Sequences:
>Translated_245_residues MTVAPPKVIPPQSLKVFRLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVMLPGIGGLD ICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLRRYQERSDDSNAKMIEYGNLCLYIE ECRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQILERIWGDDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGF GYRFG >Mature_244_residues TVAPPKVIPPQSLKVFRLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVMLPGIGGLDI CRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLRRYQERSDDSNAKMIEYGNLCLYIEE CRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQILERIWGDDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGFG YRFG
Specific function: Member of the two-component regulatory system sphR/sphS. Response regulator. Involved in inducible production of alkaline phosphatase in response to phosphate limitation as it is directly involved in the regulation of phoA transcription in response to pho
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1789809, Length=231, Percent_Identity=37.6623376623377, Blast_Score=165, Evalue=2e-42, Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=41.1255411255411, Blast_Score=154, Evalue=6e-39, Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=36.7256637168142, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=36.4035087719298, Blast_Score=140, Evalue=7e-35, Organism=Escherichia coli, GI1788394, Length=232, Percent_Identity=36.2068965517241, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1790863, Length=236, Percent_Identity=34.3220338983051, Blast_Score=137, Evalue=5e-34, Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=36.9369369369369, Blast_Score=137, Evalue=8e-34, Organism=Escherichia coli, GI1789402, Length=229, Percent_Identity=35.8078602620087, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=37.5545851528384, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1786911, Length=229, Percent_Identity=32.7510917030568, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1790552, Length=226, Percent_Identity=34.5132743362832, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787229, Length=231, Percent_Identity=31.6017316017316, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1787375, Length=229, Percent_Identity=30.5676855895196, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=30.0847457627119, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1790299, Length=129, Percent_Identity=28.6821705426357, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788550, Length=113, Percent_Identity=28.3185840707965, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787487, Length=118, Percent_Identity=30.5084745762712, Blast_Score=62, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 28143; Mature: 28012
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAPPKVIPPQSLKVFRLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQP CCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCC RHKFDLIILDVMLPGIGGLDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVK CCHHHHEEEEHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHEEEECCCCCEEC PFSVRELVARCRAQLRRYQERSDDSNAKMIEYGNLCLYIEECRVTKDGKDLSLAPKEYKI CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECEECCCCCCCCCCCHHHHH LKLLLEHPRQVLSRDQILERIWGDDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGF HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHC GYRFG CCCCC >Mature Secondary Structure TVAPPKVIPPQSLKVFRLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQP CCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCC RHKFDLIILDVMLPGIGGLDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVK CCHHHHEEEEHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHEEEECCCCCEEC PFSVRELVARCRAQLRRYQERSDDSNAKMIEYGNLCLYIEECRVTKDGKDLSLAPKEYKI CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECEECCCCCCCCCCCHHHHH LKLLLEHPRQVLSRDQILERIWGDDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGF HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHC GYRFG CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8497200; 8157591 [H]