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The map label for this gene is pds [H]

Identifier: 33863226

GI number: 33863226

Start: 1035652

End: 1037283

Strand: Reverse

Name: pds [H]

Synonym: PMT0955

Alternate gene names: 33863226

Gene position: 1037283-1035652 (Counterclockwise)

Preceding gene: 33863228

Following gene: 33863224

Centisome position: 43.03

GC content: 61.7

Gene sequence:

>1632_bases
ATGGCCGAAGGTTTTCCGGGTAAAAAGCAATCTCATGCGGTTGTCATCGGGGCCGGCTGGGCTGGCTGGGGTGCGGCTAA
GGCGCTCTGCGAAGCGGGTGTTCGGGTGACCCTAATGGATGGGATGGAGGATCCAACCGGCAGCCAGCCTCTCACCACGC
CAAGCGGTAAACCGTTCGAGGCAGGCACCCGGGGGTTCTGGAAGGATTATCCCAACATCAATGCCCTGACGGCAGAGCTC
GGGCTCGGCTCGATCTTCACGGAGTTCACCACTAGTGCGTTCTGGTCACCCGAAGGCCTGGAGGCAACGGCTCCTGTCTT
CGGTGACGCTCCGCTGTGGCCGAGTCCTCTGGGTCAGGTTGCTGCAACGATCAATAACTTCAAGCGCCTGCCTGTTGCTG
ATCGGCTCAGCATCGCCGGCCTGCTCTACGCCATGCTCGATCTGAACCGCAACGATGCGGTATACAGGAGTTACGACTCG
ATCGATGCGCTGACGCTGTTTAGACAGCTCAGGATCAGTGATCGCATGATCGATGATTTCCTGCGGCCCACGTTGCTGGT
GGGGCTGTTCAAGCCGCCGGAGGAGCTGTCGGCCGCTGTCACGATGGAGCTCCTCTACTACTACGCCCTGGCGCATCAGG
ATTCCTTCGATGTGCGTTGGATCAGGTCGAAAAGCATCGCCGAACAGCTGATTTTGCCGCTCAGTGAGCGGCTGCAGGAG
CAGCATCAGCTCGAGGTGCTGGGCGGCACCCTGGCCACCCGGCTGAACGTCTCGCCGGAGACTCAGGCCATCCGCTCGGT
GGGAACCCGTTCCGTAACAAGCGGGAGCACCGGTTTAATCGAGGATGTCGATGCTGTGGTGATTGCGGTGAGTGCCAAAG
GAATGGGTGCTTTGATGGCGCAATCCCCGGAGTGCGGCGCGCTGGCGCCGGAGCTTGTGCGTGCCGCCACGCTCGGATCG
ATCGATGTGGTGTCGATCCGTCTGTGGCTGGATCGCACCGTGCCGGTCGCCGATCCCGCCAATGTGTTCTCACGTTTCAG
CTCACTAAGAGGCGCCGGAGCCACCTTCTTCATGTTGGATCAACTGCAGCGGGAGTCGGAGCAGGCGCTCTGGGGTGATC
AGCCACCGCAGGGTTCGGTGATCGCCAGCGACTTCTACAACGCTTCGGCCATCGCCGAGCTGAGCGATCAGGAGATCATC
GACTGCCTGATGCAGGATCTGCTGCCCATAGCGCAGCCTGCCTTCAGGGGGGCCAGGGTCGTGGATCAGGAGGTGCGGCG
TTATCCGGGTTCGGTGTCTCTTTTCTCGCCGGGAAGTTTCAGCAAGCGGCCACCAATGGAGACGTCAGTGGCTTCGGTGG
TCTGCGCCGGCGACTGGGTGAGGATGGGCGAGAAAGAACATGGTGCTAAAGGCCTTTGTCAGGAACGCGCCTACGTGTGT
GGTCTGGAAGCGGGCAACTCACTGCTCAGGCGCGGGATCGTGAGGGGCGCCGACCTGCCCAGGACCCTGCAGCACTCTGT
GATACCCATCCGCGCCGATGAACCGCAGGTGGTGCTCGGGCGTGCGCTTAACAAGCTGGTGATGGCCCCCCTCGAGGCCT
TCGGGATCCAGTGGCCTTGGTTGGCTATCTAG

Upstream 100 bases:

>100_bases
TGAAGACTTCCTTAAAGAGTTGCCTTTGTCACAAGGTGGCTAAGGAAGCCCATGGTCCATGAGTTCATCTCTTTAGCTTG
GGCTGATGTAAAACAGCTTT

Downstream 100 bases:

>100_bases
CTGGCGATTCTCAAGGGATTGGCGATGAGGATTCAACAGGCTGAGATTCGTTCAGTATCAAGGCATCATGGCGCCGCTTT
CAGCAACGGCTCGTACATCA

Product: zeta-carotene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 543; Mature: 542

Protein sequence:

>543_residues
MAEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMEDPTGSQPLTTPSGKPFEAGTRGFWKDYPNINALTAEL
GLGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQVAATINNFKRLPVADRLSIAGLLYAMLDLNRNDAVYRSYDS
IDALTLFRQLRISDRMIDDFLRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLILPLSERLQE
QHQLEVLGGTLATRLNVSPETQAIRSVGTRSVTSGSTGLIEDVDAVVIAVSAKGMGALMAQSPECGALAPELVRAATLGS
IDVVSIRLWLDRTVPVADPANVFSRFSSLRGAGATFFMLDQLQRESEQALWGDQPPQGSVIASDFYNASAIAELSDQEII
DCLMQDLLPIAQPAFRGARVVDQEVRRYPGSVSLFSPGSFSKRPPMETSVASVVCAGDWVRMGEKEHGAKGLCQERAYVC
GLEAGNSLLRRGIVRGADLPRTLQHSVIPIRADEPQVVLGRALNKLVMAPLEAFGIQWPWLAI

Sequences:

>Translated_543_residues
MAEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMEDPTGSQPLTTPSGKPFEAGTRGFWKDYPNINALTAEL
GLGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQVAATINNFKRLPVADRLSIAGLLYAMLDLNRNDAVYRSYDS
IDALTLFRQLRISDRMIDDFLRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLILPLSERLQE
QHQLEVLGGTLATRLNVSPETQAIRSVGTRSVTSGSTGLIEDVDAVVIAVSAKGMGALMAQSPECGALAPELVRAATLGS
IDVVSIRLWLDRTVPVADPANVFSRFSSLRGAGATFFMLDQLQRESEQALWGDQPPQGSVIASDFYNASAIAELSDQEII
DCLMQDLLPIAQPAFRGARVVDQEVRRYPGSVSLFSPGSFSKRPPMETSVASVVCAGDWVRMGEKEHGAKGLCQERAYVC
GLEAGNSLLRRGIVRGADLPRTLQHSVIPIRADEPQVVLGRALNKLVMAPLEAFGIQWPWLAI
>Mature_542_residues
AEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMEDPTGSQPLTTPSGKPFEAGTRGFWKDYPNINALTAELG
LGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQVAATINNFKRLPVADRLSIAGLLYAMLDLNRNDAVYRSYDSI
DALTLFRQLRISDRMIDDFLRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLILPLSERLQEQ
HQLEVLGGTLATRLNVSPETQAIRSVGTRSVTSGSTGLIEDVDAVVIAVSAKGMGALMAQSPECGALAPELVRAATLGSI
DVVSIRLWLDRTVPVADPANVFSRFSSLRGAGATFFMLDQLQRESEQALWGDQPPQGSVIASDFYNASAIAELSDQEIID
CLMQDLLPIAQPAFRGARVVDQEVRRYPGSVSLFSPGSFSKRPPMETSVASVVCAGDWVRMGEKEHGAKGLCQERAYVCG
LEAGNSLLRRGIVRGADLPRTLQHSVIPIRADEPQVVLGRALNKLVMAPLEAFGIQWPWLAI

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 58803; Mature: 58672

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMEDPTGSQPLTTPSGKPFE
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
AGTRGFWKDYPNINALTAELGLGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQV
CCCCCHHHCCCCCCEEEHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
AATINNFKRLPVADRLSIAGLLYAMLDLNRNDAVYRSYDSIDALTLFRQLRISDRMIDDF
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHH
LRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLILPLSERLQE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
QHQLEVLGGTLATRLNVSPETQAIRSVGTRSVTSGSTGLIEDVDAVVIAVSAKGMGALMA
HHHHHHHCCHHHEEECCCHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEEEECCCCCHHHC
QSPECGALAPELVRAATLGSIDVVSIRLWLDRTVPVADPANVFSRFSSLRGAGATFFMLD
CCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
QLQRESEQALWGDQPPQGSVIASDFYNASAIAELSDQEIIDCLMQDLLPIAQPAFRGARV
HHHHHHHHHCCCCCCCCCCEEHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
VDQEVRRYPGSVSLFSPGSFSKRPPMETSVASVVCAGDWVRMGEKEHGAKGLCQERAYVC
HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCHHHHCCCHHCCCCHHHHHHHEEE
GLEAGNSLLRRGIVRGADLPRTLQHSVIPIRADEPQVVLGRALNKLVMAPLEAFGIQWPW
ECHHHHHHHHHHHHCCCCCCHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
LAI
CCC
>Mature Secondary Structure 
AEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMEDPTGSQPLTTPSGKPFE
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
AGTRGFWKDYPNINALTAELGLGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQV
CCCCCHHHCCCCCCEEEHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
AATINNFKRLPVADRLSIAGLLYAMLDLNRNDAVYRSYDSIDALTLFRQLRISDRMIDDF
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHH
LRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLILPLSERLQE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
QHQLEVLGGTLATRLNVSPETQAIRSVGTRSVTSGSTGLIEDVDAVVIAVSAKGMGALMA
HHHHHHHCCHHHEEECCCHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEEEECCCCCHHHC
QSPECGALAPELVRAATLGSIDVVSIRLWLDRTVPVADPANVFSRFSSLRGAGATFFMLD
CCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
QLQRESEQALWGDQPPQGSVIASDFYNASAIAELSDQEIIDCLMQDLLPIAQPAFRGARV
HHHHHHHHHCCCCCCCCCCEEHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
VDQEVRRYPGSVSLFSPGSFSKRPPMETSVASVVCAGDWVRMGEKEHGAKGLCQERAYVC
HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCHHHHCCCHHCCCCHHHHHHHEEE
GLEAGNSLLRRGIVRGADLPRTLQHSVIPIRADEPQVVLGRALNKLVMAPLEAFGIQWPW
ECHHHHHHHHHHHHCCCCCCHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
LAI
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]