| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33863149
Identifier: 33863149
GI number: 33863149
Start: 961075
End: 962700
Strand: Reverse
Name: 33863149
Synonym: PMT0877
Alternate gene names: NA
Gene position: 962700-961075 (Counterclockwise)
Preceding gene: 33863154
Following gene: 33863145
Centisome position: 39.93
GC content: 47.54
Gene sequence:
>1626_bases ATGAAGCCAGAGGCTTATCCACATCCGGTGAAGGTTGTGGAGCTTGTCGAGACCCACATTTCCTGGGTGCTTCTGACCGG TTCCTATGCCTACAAGCTCAAAAAAGCTGTGCATTTGGACTTTGTAGACGCCACCACGCTGAAGCAACGCCTTCATTTTT GCCAAGAGGAGCTGCGACTAAATCGTCGCTTGGCTCCAGACCTTTATCTAGGTGTGACCAGGATTCTCGAATCAGTTGAT GGCGCCAAAGTTCTCGATGAAAACTTTGAATTGAATGATCCATCCACAAAGGGTGTGGTTGATGTTGCTGTGAAGATGCG TCAGTTCCCTGTCTCTCGTCTTCTCAGTGTTTATCTTAGTGATGGGGTTTTGAAGACTGAATCCCTAAAAAGACTTGCTT TCGAACTTGCAGGGTTTCATCTCAGTGTCAAAACGGCTTCTGCAGATGGAGATTTTGGTGGATTTGATGCGGTAATCAAT CCTGTTCATGCCAATTTGCGTGTGTTGGATCAATTGACACTTACTGAGCCATTAGAGCTTTGGCTTGAGGAGCATCGAGC TTGGATTAAGAGTATTCAGCCAGAACTGGCTTTTCGTTTTAAACAACGACTCAATGCAGGAGCCATTCGTGAATGCCATG GCGATCTTCATGTCGGCAACATACACTTAAACAACGATGAAAGTTTAGAAGTCTTTGATGCCATTGATTTTAATCCAAGT CTTCGTTGGATCGATCCGATTAGTGAAATGGCATTTCTAGTGATGGATTTTGAGGTACACGATCATCAGGGTGATGCCAT GGTGATACTCAACGAATGGCTTGAGCACACCGGCGATTACAAGGCTCTTGATCTTTGGCCTTGGTATTCGGCTTACCGAG CGCTTGTGCGCGCCAAGGTGAGTGGTCTGCAATGGCAGCAACTCTGCTCTCAGAGTCAGCATCACTCTGTTGATCAGCAA CATCTTCAACGGCTGCTTAAGGATCTCAACCTCTATATTCAGCGGGCAAGAGAGGTCCAGCAAACAAAGTCAGCCGGTAT TGTGCTGATGCATGGACTGAGCGGTAGTGGTAAATCCTTTTTGAGTGAGCAGCTCTATCAGCAGTTGCCAGCAGTACGAT TGCGTTCAGATATTGAACGTCAGCGTGCTTTCGGTCGCCGACCACTGCACAAGCTGCTTGGCTTTGAGAAAGGATCGATG ACAAGTGTTGGCATTAAACCACTTTTTCAAGGAGACCCTTATCGACCTGAGGTCACCCAGTGGTTGTTTGATCAATGCCT ACCGGCATTGACTCAAAGTTGCTTGAGCAGTGGTTACACCACAATTGTCGATGCCACCTTCTTACGCGAACGCGAACGAC AGCGAATGTTTGTATTGGCGCGTCAACAAGGATGCCCGATTGCCATCGTGGCCTGTGAATGTAGTGATTTCACAGCTCAG GAGCGTATCGCTACAAGGATGGGGATTGGAACTGACCCCTCTGAGGCAGATTTAAGCGTGCGTGAACTGCAGAAAGCGTG GATTGAACCTCTCACAACCGATGAGCAAGACTTGACGGTTAGGTTTACGGAAAAAACTCCGATCAGCATTGGCCTAGAAC GTTTGCGTGTTTTGCTGAATCCTTAG
Upstream 100 bases:
>100_bases TGGCGGAGAGTCGTCACAGATGCGAGTGTTGAGTCATAGCTGAAACACTCCGCGGGTGACCACGACGAAGCAAAAACAAC CCGCTTTGATTCAGGCATTA
Downstream 100 bases:
>100_bases TGCATCCGATACACTTGGCTTTTGCAATAGACTATGACTTTGCTTCTCTTGTGGGGACAAACAATGAAGAATCTTTGGCT ATAGAACTCTGCTTTTGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 541; Mature: 541
Protein sequence:
>541_residues MKPEAYPHPVKVVELVETHISWVLLTGSYAYKLKKAVHLDFVDATTLKQRLHFCQEELRLNRRLAPDLYLGVTRILESVD GAKVLDENFELNDPSTKGVVDVAVKMRQFPVSRLLSVYLSDGVLKTESLKRLAFELAGFHLSVKTASADGDFGGFDAVIN PVHANLRVLDQLTLTEPLELWLEEHRAWIKSIQPELAFRFKQRLNAGAIRECHGDLHVGNIHLNNDESLEVFDAIDFNPS LRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEHTGDYKALDLWPWYSAYRALVRAKVSGLQWQQLCSQSQHHSVDQQ HLQRLLKDLNLYIQRAREVQQTKSAGIVLMHGLSGSGKSFLSEQLYQQLPAVRLRSDIERQRAFGRRPLHKLLGFEKGSM TSVGIKPLFQGDPYRPEVTQWLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGCPIAIVACECSDFTAQ ERIATRMGIGTDPSEADLSVRELQKAWIEPLTTDEQDLTVRFTEKTPISIGLERLRVLLNP
Sequences:
>Translated_541_residues MKPEAYPHPVKVVELVETHISWVLLTGSYAYKLKKAVHLDFVDATTLKQRLHFCQEELRLNRRLAPDLYLGVTRILESVD GAKVLDENFELNDPSTKGVVDVAVKMRQFPVSRLLSVYLSDGVLKTESLKRLAFELAGFHLSVKTASADGDFGGFDAVIN PVHANLRVLDQLTLTEPLELWLEEHRAWIKSIQPELAFRFKQRLNAGAIRECHGDLHVGNIHLNNDESLEVFDAIDFNPS LRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEHTGDYKALDLWPWYSAYRALVRAKVSGLQWQQLCSQSQHHSVDQQ HLQRLLKDLNLYIQRAREVQQTKSAGIVLMHGLSGSGKSFLSEQLYQQLPAVRLRSDIERQRAFGRRPLHKLLGFEKGSM TSVGIKPLFQGDPYRPEVTQWLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGCPIAIVACECSDFTAQ ERIATRMGIGTDPSEADLSVRELQKAWIEPLTTDEQDLTVRFTEKTPISIGLERLRVLLNP >Mature_541_residues MKPEAYPHPVKVVELVETHISWVLLTGSYAYKLKKAVHLDFVDATTLKQRLHFCQEELRLNRRLAPDLYLGVTRILESVD GAKVLDENFELNDPSTKGVVDVAVKMRQFPVSRLLSVYLSDGVLKTESLKRLAFELAGFHLSVKTASADGDFGGFDAVIN PVHANLRVLDQLTLTEPLELWLEEHRAWIKSIQPELAFRFKQRLNAGAIRECHGDLHVGNIHLNNDESLEVFDAIDFNPS LRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEHTGDYKALDLWPWYSAYRALVRAKVSGLQWQQLCSQSQHHSVDQQ HLQRLLKDLNLYIQRAREVQQTKSAGIVLMHGLSGSGKSFLSEQLYQQLPAVRLRSDIERQRAFGRRPLHKLLGFEKGSM TSVGIKPLFQGDPYRPEVTQWLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGCPIAIVACECSDFTAQ ERIATRMGIGTDPSEADLSVRELQKAWIEPLTTDEQDLTVRFTEKTPISIGLERLRVLLNP
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 61648; Mature: 61648
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPEAYPHPVKVVELVETHISWVLLTGSYAYKLKKAVHLDFVDATTLKQRLHFCQEELRL CCCCCCCCHHHHHHHHHHHHHEEEEECHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHH NRRLAPDLYLGVTRILESVDGAKVLDENFELNDPSTKGVVDVAVKMRQFPVSRLLSVYLS HHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH DGVLKTESLKRLAFELAGFHLSVKTASADGDFGGFDAVINPVHANLRVLDQLTLTEPLEL CCCCCHHHHHHHHHHHHCEEEEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH WLEEHRAWIKSIQPELAFRFKQRLNAGAIRECHGDLHVGNIHLNNDESLEVFDAIDFNPS HHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHCCCEEEEEEEECCCCCEEEEEEECCCCC LRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEHTGDYKALDLWPWYSAYRALVRAKV CCEECCHHHHEEHHEEEEEECCCCCEEEEHHHHHHCCCCCCEEECCHHHHHHHHHHHHHH SGLQWQQLCSQSQHHSVDQQHLQRLLKDLNLYIQRAREVQQTKSAGIVLMHGLSGSGKSF CCCHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LSEQLYQQLPAVRLRSDIERQRAFGRRPLHKLLGFEKGSMTSVGIKPLFQGDPYRPEVTQ HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH WLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGCPIAIVACECSDFTAQ HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCHHH ERIATRMGIGTDPSEADLSVRELQKAWIEPLTTDEQDLTVRFTEKTPISIGLERLRVLLN HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC P C >Mature Secondary Structure MKPEAYPHPVKVVELVETHISWVLLTGSYAYKLKKAVHLDFVDATTLKQRLHFCQEELRL CCCCCCCCHHHHHHHHHHHHHEEEEECHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHH NRRLAPDLYLGVTRILESVDGAKVLDENFELNDPSTKGVVDVAVKMRQFPVSRLLSVYLS HHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH DGVLKTESLKRLAFELAGFHLSVKTASADGDFGGFDAVINPVHANLRVLDQLTLTEPLEL CCCCCHHHHHHHHHHHHCEEEEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH WLEEHRAWIKSIQPELAFRFKQRLNAGAIRECHGDLHVGNIHLNNDESLEVFDAIDFNPS HHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHCCCEEEEEEEECCCCCEEEEEEECCCCC LRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEHTGDYKALDLWPWYSAYRALVRAKV CCEECCHHHHEEHHEEEEEECCCCCEEEEHHHHHHCCCCCCEEECCHHHHHHHHHHHHHH SGLQWQQLCSQSQHHSVDQQHLQRLLKDLNLYIQRAREVQQTKSAGIVLMHGLSGSGKSF CCCHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LSEQLYQQLPAVRLRSDIERQRAFGRRPLHKLLGFEKGSMTSVGIKPLFQGDPYRPEVTQ HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH WLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGCPIAIVACECSDFTAQ HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCHHH ERIATRMGIGTDPSEADLSVRELQKAWIEPLTTDEQDLTVRFTEKTPISIGLERLRVLLN HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC P C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]