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The map label for this gene is som

Identifier: 33863074

GI number: 33863074

Start: 878122

End: 879717

Strand: Reverse

Name: som

Synonym: PMT0802

Alternate gene names: NA

Gene position: 879717-878122 (Counterclockwise)

Preceding gene: 33863075

Following gene: 33863072

Centisome position: 36.49

GC content: 49.19

Gene sequence:

>1596_bases
ATGAAACTCTTCCAGCAATTGCTGGTGGCACCTGCTGCTTTGGGCCTTATGGCACCAATGGCTGCTAATGCCGCAGACCT
AGACATCAAAGGTGTGTCCGATTATTCGGCCTCCAGCGAGCAGGTCACCAGCATCTCCCAATTCCAAGATGTTTACCCAA
CCGATTGGGCTTACCAGGCGCTGAGCAACCTGATTGAGCGCTACGGCTGTGTAGCTGGCTATCCAAGCGGAAGCTACCTC
GGCAACAGAGCAATGACCCGCTTTGAAGCGGCTGCTCTATTGAATGCTTGCCTCGATCGCATCACTGAAGTCACCGACGA
ACTGCGTCGTCTGCTCAACGAATTCGAGCAGGAGCTCGCAATCCTCAAGGGCCGTGTTGATGGGCTAGAAGCCCGCGTTG
GTGAACTCGAAGCCACTCAGTTTTCCACCACCACCAAGCTTGTTGGTCAGGCTTCCTTTGTTCTCGGTGCAAATAGCTTT
GCTGGCTCACTTGACGATGTAAGAGATATCTATAACAAAGAGTGGGGTGCAACCAGCTTCAACTATGACCTTGAGCTTGT
GCTGAACACGAGCTTTACAGGTAAGGACTCACTGTCTACTACTTTGCGTGCAGGTAACTTCGGAAAGACTGTATTCGGAG
GAGATGGACCCACAAACCTCTCGACCTTGGAAGTTGCGTCTGAGTCAGAAACTGGTGCCGATCTCGTGTATATCGACAAG
ATTTTTTACCAATTCCCGATTGGTGAGAACTTCACTGCAACTCTTGGCGCAATCGTTGGCCAGGAAGACATGCTTGCAAT
TTGGCCAACGGCCTATGCAAGTGATGGATCTTCAACGGTTTTGGATGTCGTCACATTACCTGGTGCATCAGCTGGTGCTT
TCAACAAAAACCTGGGTCAGGGCGCTGGCATTTGGTGGGAGAACAATGGTTGGGCAATCAGTGTCAATTATGTTGCTGCC
AATGGACGTAACGGTGATCCCAATTCCAATGATTATCTTTGTGGTGGCATAGCTAATGATTGTTCAGCTGGAACAGGAAC
TGCTCAAATCGGATATATCGATGAGCAGTGGGGTGTCGCTGCGACCTATAGCTATCTTCAAAATAATGATCTTGTTCTTT
ACTCGAGTATGGATGTAGCTGATAGCTACGGATTCACTTCTGGAACCGATAGCTATACAAATGCCTTCGCATTGTCTGCA
TACTGGATGCCTCAAGAGAATGGTTGGATCCCTTCAGTTAGCCTTGGCTGGGGCATCAATTCAACCAGCTTTGAGGATGA
CCATGATGTTTACAAGGGAGAAGTTTCTCAGTCGCAGTCCTGGATGGTTGGTCTCGAATGGAATGATCTGTTTGTTGAAG
GTAACGCTGGTGGTTTCGCGATCGGCCAGGCACCATTCGCAACCAGGCTTAAAGGTGGTGGCACACCTCATGATGGAAAC
TATGTTTCAGAGCTTTGGTATAAGTTCCAGGTGACTAACAACATTGTTGTTACCCCAGGCCTCTTCTATCTGAGCCGCCC
TGCCTCAGGGCTTATGGATACTGATGAAACACTCAACCAGCTTGGTGGTGTATTGAGAACGACATTCAGCTTCTAG

Upstream 100 bases:

>100_bases
GCAATTTCTGTCGGTATAGGCACTAATAGTCTTTCAAAGGCTAATGCTAATAACAGATCATTATCATCCGCCTTTCTCCC
CTATCTGTGTGAGGAACCTA

Downstream 100 bases:

>100_bases
ATCGCAAGCTTTGACTTGCATCAACAGCTTGATATTCTAAATTTATGTTTGACGATAATCCAGAGCGTTTTTTACACTCT
TTCATATGTAATTTAAGATT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLVGQASFVLGANSF
AGSLDDVRDIYNKEWGATSFNYDLELVLNTSFTGKDSLSTTLRAGNFGKTVFGGDGPTNLSTLEVASESETGADLVYIDK
IFYQFPIGENFTATLGAIVGQEDMLAIWPTAYASDGSSTVLDVVTLPGASAGAFNKNLGQGAGIWWENNGWAISVNYVAA
NGRNGDPNSNDYLCGGIANDCSAGTGTAQIGYIDEQWGVAATYSYLQNNDLVLYSSMDVADSYGFTSGTDSYTNAFALSA
YWMPQENGWIPSVSLGWGINSTSFEDDHDVYKGEVSQSQSWMVGLEWNDLFVEGNAGGFAIGQAPFATRLKGGGTPHDGN
YVSELWYKFQVTNNIVVTPGLFYLSRPASGLMDTDETLNQLGGVLRTTFSF

Sequences:

>Translated_531_residues
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLVGQASFVLGANSF
AGSLDDVRDIYNKEWGATSFNYDLELVLNTSFTGKDSLSTTLRAGNFGKTVFGGDGPTNLSTLEVASESETGADLVYIDK
IFYQFPIGENFTATLGAIVGQEDMLAIWPTAYASDGSSTVLDVVTLPGASAGAFNKNLGQGAGIWWENNGWAISVNYVAA
NGRNGDPNSNDYLCGGIANDCSAGTGTAQIGYIDEQWGVAATYSYLQNNDLVLYSSMDVADSYGFTSGTDSYTNAFALSA
YWMPQENGWIPSVSLGWGINSTSFEDDHDVYKGEVSQSQSWMVGLEWNDLFVEGNAGGFAIGQAPFATRLKGGGTPHDGN
YVSELWYKFQVTNNIVVTPGLFYLSRPASGLMDTDETLNQLGGVLRTTFSF
>Mature_531_residues
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLVGQASFVLGANSF
AGSLDDVRDIYNKEWGATSFNYDLELVLNTSFTGKDSLSTTLRAGNFGKTVFGGDGPTNLSTLEVASESETGADLVYIDK
IFYQFPIGENFTATLGAIVGQEDMLAIWPTAYASDGSSTVLDVVTLPGASAGAFNKNLGQGAGIWWENNGWAISVNYVAA
NGRNGDPNSNDYLCGGIANDCSAGTGTAQIGYIDEQWGVAATYSYLQNNDLVLYSSMDVADSYGFTSGTDSYTNAFALSA
YWMPQENGWIPSVSLGWGINSTSFEDDHDVYKGEVSQSQSWMVGLEWNDLFVEGNAGGFAIGQAPFATRLKGGGTPHDGN
YVSELWYKFQVTNNIVVTPGLFYLSRPASGLMDTDETLNQLGGVLRTTFSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SLH (S-layer homology) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049
- InterPro:   IPR001119 [H]

Pfam domain/function: PF04966 OprB; PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 57124; Mature: 57124

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: PS01072 SLH_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQA
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LSNLIERYGCVAGYPSGSYLGNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELA
HHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKGRVDGLEARVGELEATQFSTTTKLVGQASFVLGANSFAGSLDDVRDIYNKEWGATSF
HHHCCCCCHHHHHCCCCCHHHHHHHHHHCCEEEEEECCHHCCCHHHHHHHHCCCCCCCCC
NYDLELVLNTSFTGKDSLSTTLRAGNFGKTVFGGDGPTNLSTLEVASESETGADLVYIDK
CCEEEEEEECCCCCCCCCHHHEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCEEEEEE
IFYQFPIGENFTATLGAIVGQEDMLAIWPTAYASDGSSTVLDVVTLPGASAGAFNKNLGQ
EHEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
GAGIWWENNGWAISVNYVAANGRNGDPNSNDYLCGGIANDCSAGTGTAQIGYIDEQWGVA
CCCEEECCCCEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCHH
ATYSYLQNNDLVLYSSMDVADSYGFTSGTDSYTNAFALSAYWMPQENGWIPSVSLGWGIN
HHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCC
STSFEDDHDVYKGEVSQSQSWMVGLEWNDLFVEGNAGGFAIGQAPFATRLKGGGTPHDGN
CCCCCCCCHHHCCCCCCCCCEEEEEEECEEEEECCCCCEEECCCCCHHHHCCCCCCCCCC
YVSELWYKFQVTNNIVVTPGLFYLSRPASGLMDTDETLNQLGGVLRTTFSF
HHHHEEEEEEECCCEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQA
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LSNLIERYGCVAGYPSGSYLGNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELA
HHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKGRVDGLEARVGELEATQFSTTTKLVGQASFVLGANSFAGSLDDVRDIYNKEWGATSF
HHHCCCCCHHHHHCCCCCHHHHHHHHHHCCEEEEEECCHHCCCHHHHHHHHCCCCCCCCC
NYDLELVLNTSFTGKDSLSTTLRAGNFGKTVFGGDGPTNLSTLEVASESETGADLVYIDK
CCEEEEEEECCCCCCCCCHHHEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCEEEEEE
IFYQFPIGENFTATLGAIVGQEDMLAIWPTAYASDGSSTVLDVVTLPGASAGAFNKNLGQ
EHEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
GAGIWWENNGWAISVNYVAANGRNGDPNSNDYLCGGIANDCSAGTGTAQIGYIDEQWGVA
CCCEEECCCCEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCHH
ATYSYLQNNDLVLYSSMDVADSYGFTSGTDSYTNAFALSAYWMPQENGWIPSVSLGWGIN
HHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCC
STSFEDDHDVYKGEVSQSQSWMVGLEWNDLFVEGNAGGFAIGQAPFATRLKGGGTPHDGN
CCCCCCCCHHHCCCCCCCCCEEEEEEECEEEEECCCCCEEECCCCCHHHHCCCCCCCCCC
YVSELWYKFQVTNNIVVTPGLFYLSRPASGLMDTDETLNQLGGVLRTTFSF
HHHHEEEEEEECCCEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]