| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is ctpA [H]
Identifier: 33863048
GI number: 33863048
Start: 850375
End: 851736
Strand: Reverse
Name: ctpA [H]
Synonym: PMT0776
Alternate gene names: 33863048
Gene position: 851736-850375 (Counterclockwise)
Preceding gene: 33863049
Following gene: 33863032
Centisome position: 35.33
GC content: 45.15
Gene sequence:
>1362_bases ATGCCCATCTCTAGAAGTCTTCGCTCATTAGGCCGCCAGCGCAGTTCATGGCTGGTCCTTCTGGGCGCGGGAGGAGCTGC TACTGCAATTGCACTTGCCTCTCCAAGTTTGGGTTTACCAAGGAGTTCTTCTTCCGCTATTAGTGATAGCCCCAAAGAGG TGATTGATCAGGTCTGGCAGATTGTATATCGTGACTATCTTGATTCCACAGGTAAATATAACCCTGAAGTATGGAAGGGA CTACGCAAGGACTTATTAGCCAAGAACTATTCAGCCACTTCAGAATCCTATGAAGCGATCCGTGGCATGTTAGCAAGCTT GGATGATCCCTATACACGATTCTTAGATCCAAAGGAATTTAAGGAAATGCAGATCGACACCTCAGGAGAATTAACAGGTG TTGGCATCCAGCTTTCTCTAGACAAGGATACAAAAGAATTAGTTGTGGTTTCACCAATCGAAGGAACTCCTGCCTCTAAG GCTGGTGTCCAACCTAAGGATGTGATCGTTTTCATTAATGGACAATCCACTAAGGGCATGTCTACAGCGGATGCTGTTAA GTTGATTCGTGGTAAAGAAGGTAGTGAGGTCACCCTTGGTCTGCGTCGCAGGGGTGAAGTTATCCAGGTCCCGTTGATAC GTGCACGCATTGAGATACAGGCAGTTGATATCCAGTTAAATACGACAGTAAGTGGTACAAAGATTGGTTATATCCGCCTG AAACAGTTTAATGCCCATGCAGCTAAAGGAATGCGAAGTGCTATCAAGAATTTAGAAAAAGAGGGTGCGCAAGGCTATGT ACTCGACTTGCGTAGTAATCCTGGAGGTTTGCTTGAAGCCAGTATTGATATCGCACGCCAATGGCTTGATGAAGGTACAA TTGTTCGAACAAAAACTCGTGATGGCATTCAAGATGTACGCCGAGCGAATGGAAGTGCCTTAACCCAACGCCCTGTTGTT GTTTTGGTGAATGAAGGCTCAGCAAGCGCAAGTGAGATCCTCTCTGGAGCACTACAAGACAATCATCGTGGTGTACTTGT AGGACAGAAGACCTTTGGCAAGGGCTTGGTTCAATCAGTTCGAGGCCTTTCTGATGGCTCTGGTCTTACTGTCACGATCG CTAAGTATCTCACTCCAAGCGGAACGGACATTCATAAAAATGGTATCAAGCCAGATATTAAGGCCGTGATGTCTGAAAAA GAAATCAATAATCTTAAGCTTGAGGATCTTGGTTCTGGGAAGGATAGTCAATACAAGGTGGCCGAAACAACACTAATTAA AGCCCTAAGCAAAATACTTGATGGACCAATGTATAAGCCTGTAGGAGTTAAACTTCCTCAGGCTATTCCATCAACGCTAT AA
Upstream 100 bases:
>100_bases GAGGGTGTAGATGCGTTGATCCAGTTGATTAAGGATGACGGTCGATGGGTGGATCCGCCATGAAGTCGTTATTGTGTGAG ATCAGTCCAATTTGGACGCT
Downstream 100 bases:
>100_bases TATCTAAAAGTTAGGCTTTCTGTTAAATAATGATTAATGTATGACCTTGCAGGATGTGTACGAGGGCATATAATTACGCC CCGTTTGATCTCTAAGTAAC
Product: carboxyl-terminal processing protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MPISRSLRSLGRQRSSWLVLLGAGGAATAIALASPSLGLPRSSSSAISDSPKEVIDQVWQIVYRDYLDSTGKYNPEVWKG LRKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEFKEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASK AGVQPKDVIVFINGQSTKGMSTADAVKLIRGKEGSEVTLGLRRRGEVIQVPLIRARIEIQAVDIQLNTTVSGTKIGYIRL KQFNAHAAKGMRSAIKNLEKEGAQGYVLDLRSNPGGLLEASIDIARQWLDEGTIVRTKTRDGIQDVRRANGSALTQRPVV VLVNEGSASASEILSGALQDNHRGVLVGQKTFGKGLVQSVRGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEK EINNLKLEDLGSGKDSQYKVAETTLIKALSKILDGPMYKPVGVKLPQAIPSTL
Sequences:
>Translated_453_residues MPISRSLRSLGRQRSSWLVLLGAGGAATAIALASPSLGLPRSSSSAISDSPKEVIDQVWQIVYRDYLDSTGKYNPEVWKG LRKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEFKEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASK AGVQPKDVIVFINGQSTKGMSTADAVKLIRGKEGSEVTLGLRRRGEVIQVPLIRARIEIQAVDIQLNTTVSGTKIGYIRL KQFNAHAAKGMRSAIKNLEKEGAQGYVLDLRSNPGGLLEASIDIARQWLDEGTIVRTKTRDGIQDVRRANGSALTQRPVV VLVNEGSASASEILSGALQDNHRGVLVGQKTFGKGLVQSVRGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEK EINNLKLEDLGSGKDSQYKVAETTLIKALSKILDGPMYKPVGVKLPQAIPSTL >Mature_452_residues PISRSLRSLGRQRSSWLVLLGAGGAATAIALASPSLGLPRSSSSAISDSPKEVIDQVWQIVYRDYLDSTGKYNPEVWKGL RKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEFKEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASKA GVQPKDVIVFINGQSTKGMSTADAVKLIRGKEGSEVTLGLRRRGEVIQVPLIRARIEIQAVDIQLNTTVSGTKIGYIRLK QFNAHAAKGMRSAIKNLEKEGAQGYVLDLRSNPGGLLEASIDIARQWLDEGTIVRTKTRDGIQDVRRANGSALTQRPVVV LVNEGSASASEILSGALQDNHRGVLVGQKTFGKGLVQSVRGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEKE INNLKLEDLGSGKDSQYKVAETTLIKALSKILDGPMYKPVGVKLPQAIPSTL
Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=310, Percent_Identity=31.6129032258064, Blast_Score=129, Evalue=3e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 48733; Mature: 48601
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISRSLRSLGRQRSSWLVLLGAGGAATAIALASPSLGLPRSSSSAISDSPKEVIDQVWQ CCCHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH IVYRDYLDSTGKYNPEVWKGLRKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEF HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHH KEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASKAGVQPKDVIVFINGQSTKGM HHEECCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCC STADAVKLIRGKEGSEVTLGLRRRGEVIQVPLIRARIEIQAVDIQLNTTVSGTKIGYIRL CHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEECEECCCEEEEEEE KQFNAHAAKGMRSAIKNLEKEGAQGYVLDLRSNPGGLLEASIDIARQWLDEGTIVRTKTR EECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEECCH DGIQDVRRANGSALTQRPVVVLVNEGSASASEILSGALQDNHRGVLVGQKTFGKGLVQSV HHHHHHHHCCCCCEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHH RGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEKEINNLKLEDLGSGKDSQYKV HCCCCCCCEEEEEEEHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCEEH AETTLIKALSKILDGPMYKPVGVKLPQAIPSTL HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PISRSLRSLGRQRSSWLVLLGAGGAATAIALASPSLGLPRSSSSAISDSPKEVIDQVWQ CCHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH IVYRDYLDSTGKYNPEVWKGLRKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEF HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHH KEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASKAGVQPKDVIVFINGQSTKGM HHEECCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCC STADAVKLIRGKEGSEVTLGLRRRGEVIQVPLIRARIEIQAVDIQLNTTVSGTKIGYIRL CHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEECEECCCEEEEEEE KQFNAHAAKGMRSAIKNLEKEGAQGYVLDLRSNPGGLLEASIDIARQWLDEGTIVRTKTR EECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEECCH DGIQDVRRANGSALTQRPVVVLVNEGSASASEILSGALQDNHRGVLVGQKTFGKGLVQSV HHHHHHHHCCCCCEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHH RGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEKEINNLKLEDLGSGKDSQYKV HCCCCCCCEEEEEEEHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCEEH AETTLIKALSKILDGPMYKPVGVKLPQAIPSTL HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8034700; 8058761; 8590279; 8905231 [H]