| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is 33862682
Identifier: 33862682
GI number: 33862682
Start: 459073
End: 460296
Strand: Reverse
Name: 33862682
Synonym: PMT0409
Alternate gene names: NA
Gene position: 460296-459073 (Counterclockwise)
Preceding gene: 33862683
Following gene: 33862679
Centisome position: 19.09
GC content: 55.64
Gene sequence:
>1224_bases ATGACTCCCGAGAATCAAGCTATTTCAGGTCAAGTGAGTGCCAATAAGACTGTCTCTTGGCTTGATCAAGAGTGGCCTTG GTGGCCGCTGTTACCTCTCTATCCCTATGGTCAGCGCCGCACCCTGGTCCGGGAACTAATACCCAATCAGATCTGGAGTT TTGAACAACTCCAAGGCCTCTATTACGTCGCTGTGCCTGTAAGGCTCACCGTGGTGAAGGTGCCAGGTGGGTTGATGTTG TTCAATCCCCTTCCGCCTACTCCCGAGTTGCGCCGAGCTCTAGCTGATCTGGAGGCCACACATGGCAATGTCGTCACGAT TGTGCTCCCCACCGCGTCTGGCCTAGAGCACAAACTGTCTCTACCGGCAATGGCACGAGCCTTCCCACAGGCAGAGGTAT GGGTTTGTCCTGGTCAGTGGAGTTTCCCAATTTCCTTGCCTTCATCTTGGCTGGGCATTCCAGCGCGCCGCACCAAGGTG TTGCAGGAGGACGGCTTTCCCCATCCAGACAGTTGTACTTGGCTGCCTTTAGGCCCCCTGGATTTGGGGCTTGGCCGTTT TGAAGAGGTGGCTTGTTTTCACCGAGCTTCCGGAGCTGTATTGGTAACAGATGCTCTAGTGGGCATCGAGGCAGAGCCTC CAGCTCTGTTTGATCTAGACCCCACACCCTTGTTATTCCACGCCCGTGATCGGGGTGATCAACCCCTTGAGGATTCTCCA CAAGCGCGCCGCCGAGGATGGGCCCGTGTGGTGTTGTTCGCGACCTATCTGAAGCCAGGGCCGCTTGTGATTCCTCCCCT GTTGGAGGTGCTGCGCAATGCCTTCAGGCCCGGAACACTTAGCCCTAAAGCCCATTTCGGCCTGTTTCCATTCGCTTGGC AGCCCGGATGGGAAGCTGCGGCTCAGGAGCGTCTCGGGAAGAACGGCCCACTCCTACAAATTGCGCCTGTGTTGGAGCGG CTGGTATTTCCAAGAGCGAAGGACGTCTTATTGGAATGGTTGGATGAGATGCGGCGCCTGAAAGGGATGCGCTGGCTTGT GTCTGCTCACTTCAGCGACATCGTGGCCTTCAAGCCTCATCACGTTCGAGATTTAAGTGAATCTATTTCCAGACGCCCAT GGGCTATCAATCAAGCCAGCTGGAGCTTTCTAGGCAGCGTTGATCAACGCCTGCTCAACCTTGGTGTGGTACCGAAAGAT CCTCAGGCAGCCTTCAAAGATTGA
Upstream 100 bases:
>100_bases GCGTCATCCAGGGACTGACTCGCTTGCTCGCCTGTTCTATCTCTAGCTTGTACCTAAAACCAGTTGCAGAAGATGTTGAC CACTTGCACAAACTGAGGAT
Downstream 100 bases:
>100_bases GATCATCTGTGTCGACTGCCATCGCTTCATCTGAAAACAACGACTCTTCCAATTCCTTGCGTTGCTCCATTTGGCGCAAG AAATATCCAGTCATCATTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MTPENQAISGQVSANKTVSWLDQEWPWWPLLPLYPYGQRRTLVRELIPNQIWSFEQLQGLYYVAVPVRLTVVKVPGGLML FNPLPPTPELRRALADLEATHGNVVTIVLPTASGLEHKLSLPAMARAFPQAEVWVCPGQWSFPISLPSSWLGIPARRTKV LQEDGFPHPDSCTWLPLGPLDLGLGRFEEVACFHRASGAVLVTDALVGIEAEPPALFDLDPTPLLFHARDRGDQPLEDSP QARRRGWARVVLFATYLKPGPLVIPPLLEVLRNAFRPGTLSPKAHFGLFPFAWQPGWEAAAQERLGKNGPLLQIAPVLER LVFPRAKDVLLEWLDEMRRLKGMRWLVSAHFSDIVAFKPHHVRDLSESISRRPWAINQASWSFLGSVDQRLLNLGVVPKD PQAAFKD
Sequences:
>Translated_407_residues MTPENQAISGQVSANKTVSWLDQEWPWWPLLPLYPYGQRRTLVRELIPNQIWSFEQLQGLYYVAVPVRLTVVKVPGGLML FNPLPPTPELRRALADLEATHGNVVTIVLPTASGLEHKLSLPAMARAFPQAEVWVCPGQWSFPISLPSSWLGIPARRTKV LQEDGFPHPDSCTWLPLGPLDLGLGRFEEVACFHRASGAVLVTDALVGIEAEPPALFDLDPTPLLFHARDRGDQPLEDSP QARRRGWARVVLFATYLKPGPLVIPPLLEVLRNAFRPGTLSPKAHFGLFPFAWQPGWEAAAQERLGKNGPLLQIAPVLER LVFPRAKDVLLEWLDEMRRLKGMRWLVSAHFSDIVAFKPHHVRDLSESISRRPWAINQASWSFLGSVDQRLLNLGVVPKD PQAAFKD >Mature_406_residues TPENQAISGQVSANKTVSWLDQEWPWWPLLPLYPYGQRRTLVRELIPNQIWSFEQLQGLYYVAVPVRLTVVKVPGGLMLF NPLPPTPELRRALADLEATHGNVVTIVLPTASGLEHKLSLPAMARAFPQAEVWVCPGQWSFPISLPSSWLGIPARRTKVL QEDGFPHPDSCTWLPLGPLDLGLGRFEEVACFHRASGAVLVTDALVGIEAEPPALFDLDPTPLLFHARDRGDQPLEDSPQ ARRRGWARVVLFATYLKPGPLVIPPLLEVLRNAFRPGTLSPKAHFGLFPFAWQPGWEAAAQERLGKNGPLLQIAPVLERL VFPRAKDVLLEWLDEMRRLKGMRWLVSAHFSDIVAFKPHHVRDLSESISRRPWAINQASWSFLGSVDQRLLNLGVVPKDP QAAFKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45620; Mature: 45489
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPENQAISGQVSANKTVSWLDQEWPWWPLLPLYPYGQRRTLVRELIPNQIWSFEQLQGL CCCCCCCEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCE YYVAVPVRLTVVKVPGGLMLFNPLPPTPELRRALADLEATHGNVVTIVLPTASGLEHKLS EEEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHCC LPAMARAFPQAEVWVCPGQWSFPISLPSSWLGIPARRTKVLQEDGFPHPDSCTWLPLGPL CCHHHHHCCCCEEEECCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCEEEECCHH DLGLGRFEEVACFHRASGAVLVTDALVGIEAEPPALFDLDPTPLLFHARDRGDQPLEDSP HHCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCC QARRRGWARVVLFATYLKPGPLVIPPLLEVLRNAFRPGTLSPKAHFGLFPFAWQPGWEAA HHHHCCHHEEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH AQERLGKNGPLLQIAPVLERLVFPRAKDVLLEWLDEMRRLKGMRWLVSAHFSDIVAFKPH HHHHHCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCH HVRDLSESISRRPWAINQASWSFLGSVDQRLLNLGVVPKDPQAAFKD HHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCHHCCCC >Mature Secondary Structure TPENQAISGQVSANKTVSWLDQEWPWWPLLPLYPYGQRRTLVRELIPNQIWSFEQLQGL CCCCCCEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCE YYVAVPVRLTVVKVPGGLMLFNPLPPTPELRRALADLEATHGNVVTIVLPTASGLEHKLS EEEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHCC LPAMARAFPQAEVWVCPGQWSFPISLPSSWLGIPARRTKVLQEDGFPHPDSCTWLPLGPL CCHHHHHCCCCEEEECCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCEEEECCHH DLGLGRFEEVACFHRASGAVLVTDALVGIEAEPPALFDLDPTPLLFHARDRGDQPLEDSP HHCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCC QARRRGWARVVLFATYLKPGPLVIPPLLEVLRNAFRPGTLSPKAHFGLFPFAWQPGWEAA HHHHCCHHEEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH AQERLGKNGPLLQIAPVLERLVFPRAKDVLLEWLDEMRRLKGMRWLVSAHFSDIVAFKPH HHHHHCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCH HVRDLSESISRRPWAINQASWSFLGSVDQRLLNLGVVPKDPQAAFKD HHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA