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The map label for this gene is nifU [H]

Identifier: 33862527

GI number: 33862527

Start: 287028

End: 287273

Strand: Reverse

Name: nifU [H]

Synonym: PMT0254

Alternate gene names: 33862527

Gene position: 287273-287028 (Counterclockwise)

Preceding gene: 33862529

Following gene: 33862524

Centisome position: 11.92

GC content: 50.81

Gene sequence:

>246_bases
ATGAGTACAGAAGCCATGGCCCTCACCAACGAGAACGTGGAAACCGTTCTCGATGAACTAAGGCCCTTTCTTATGGCAGA
CGGCGGCAATGTAGAAATCGTCGAAATTGATGGTCCTGTGGTGAAAGTGCGTCTTCAAGGAGCCTGTGGCAGCTGCCCTA
GTAGCACCATGACCCTAAAAATGGGTATCGAACGCAAGTTGCGCGAAATGATCCCCGAAGTCAGTGAAGTGGTGCAGGTG
CTTTAA

Upstream 100 bases:

>100_bases
TCCAGCAACATCAGAGACGACCACAACTTGAAAGCACCCCTGCTGGCAAGGTTATGAGCGAACCCCCTAGGCTGGATAGA
TCCAAACGTGCAGAGCATCC

Downstream 100 bases:

>100_bases
AGGCTGTAACCAGAACAACTCTTCCGCATGAGAATTTTTAGCATTTAAAAATTCATGGCTTCGTCCAAACACGACGGTTG
AGATTGAGCTCTTCAACCAC

Product: NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MSTEAMALTNENVETVLDELRPFLMADGGNVEIVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKLREMIPEVSEVVQV
L

Sequences:

>Translated_81_residues
MSTEAMALTNENVETVLDELRPFLMADGGNVEIVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKLREMIPEVSEVVQV
L
>Mature_80_residues
STEAMALTNENVETVLDELRPFLMADGGNVEIVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKLREMIPEVSEVVQVL

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17541876, Length=61, Percent_Identity=49.1803278688525, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45551492, Length=70, Percent_Identity=44.2857142857143, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24643765, Length=70, Percent_Identity=44.2857142857143, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45556188, Length=70, Percent_Identity=44.2857142857143, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001075
- ProDom:   PD002830 [H]

Pfam domain/function: PF01106 NifU [H]

EC number: NA

Molecular weight: Translated: 8807; Mature: 8676

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
9.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEAMALTNENVETVLDELRPFLMADGGNVEIVEIDGPVVKVRLQGACGSCPSSTMTLK
CCCCCEEECCCCHHHHHHHHHHHEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEE
MGIERKLREMIPEVSEVVQVL
ECHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
STEAMALTNENVETVLDELRPFLMADGGNVEIVEIDGPVVKVRLQGACGSCPSSTMTLK
CCCCEEECCCCHHHHHHHHHHHEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEE
MGIERKLREMIPEVSEVVQVL
ECHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8424961 [H]