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The map label for this gene is ycbB [H]

Identifier: 326424107

GI number: 326424107

Start: 3025435

End: 3027042

Strand: Reverse

Name: ycbB [H]

Synonym: NA

Alternate gene names: 326424107

Gene position: 3027042-3025435 (Counterclockwise)

Preceding gene: 326424108

Following gene: 326424106

Centisome position: 92.24

GC content: 46.7

Gene sequence:

>1608_bases
TTGGGAAATTTGCCATACTTACTGAGTGGATTGAGTTCTCAAGGAGCAGAGATGCGGTGGCAACGAGTGTTACTTCTGAT
AGGCATTTTCTTCTCTAGTCCTACTTGGTCGCTGACCGGATTAGAAGAGAAGCAGTGGTTGGATGGGAACTCCGCCGTGT
TTGCCTATGTCCAGTTTCCTGAGCATGTTGAGCGCTTGTATCAAGGAAATCATCATCGACTCATTTGGTCTGATAATGAA
GCGACCTCGCAACTTGAATTCCAGCTAGAACTGATCAAAACCGCGTCTGTCAGCCCCTATTTCGACTACCAAATCAGTAA
ACTGAGGCGCTATAAAAACGAGCAAAAATGGTTTGAGTATGACATTGTTGCCACCGACCTACTGCTTTCCTACATCAGCT
ACTTGGAAAAACTCCCCCAACATGGCAAAGAGTGGCTCTTTACACAGCCGTTAAGCCAAAGTTTGCCCGCACCTTCTTAT
TCATCAATGAATCGTTTATCTGCAGATATTCAGGCTGGGTATTTAGCAACGTTTGTCCGTTCATTGCGTTCGCCGTTGCA
GCGCCATCAGCAGTTTGCCAATCGTTATAGTCGTTTACTAAAGGCGCGAGATCACGCCGTGCCGCTTTTTCATCAGGTGG
GTTTATTGAAGCTGGGGGATAAACTGCCTGATAGAGCCAATTTGATCAAACGTTTAGAAGTGGTGGGTCTTGAAACCAGC
CATTTGAAGCGGGATATCAAATACTACGACACGCAGCTTGAACTGGCGGTGAAACAATTTCAAAAAATGCATGGGCTGAC
GCAAGACGGTGTTGTCGGGCCTATTACCTTAAAATGGCTTAACATGACTCCCGCTCAGCGGCTGCACTCGATGGCGTTGA
ACTCTGAGCGCTCGAGACTTTGGCCAGAAGAACGAGATCTGCTGGTCTTGGTCAATGTGCCAGGCTATGAGATGAAGTTT
TGGTATAAGGGCGAGGAGATCTTTGAATCCAAAGTGGTAGTTGGCAGAAAGAGCCGAAAAACGCCGATTATGGTGGGCAA
GATGGATGGGGTGGTGCTAAATCCCGTATGGAACGTGCCGAAAACCATTATGGTCAAAGATATTTTGCCCAAAGTGAAAT
ATGACCAAAGCTTCTTAACCAAACAAAATATTGAAATTGTTGAAGGGTGGGACTCGCAAACCGCGGTGAATCCACAAACC
ATTGATTGGACAAAGGTGTCACTCAAATCCTTCCCATACAAGATGCGTCAACTGGCTGGAGATAAAAACGCGTTAGGGCT
GTACAAATTTAATATTCCCAATAAGCGTGCGATCTTTTTGCACGACACTCCGTCGAAAAGTTTGTTCCAAGAAGACAGCC
GAGCGTTCAGCTCTGGGTGTGTGCGGGTTCAAAATGCCGATCAGTTTGCGCTGCAATTGCTGAAAACCCAAGGGCTGGAG
GAAGAGCTCTCCAATTTAGCGACTCGGCAAGAAGCCAACACTATGATCCCCCTCAAGCGTCGTATTCCCGTCCATATCAT
CTATCAGACAGTGTGGTTTGAAGGGGAAGAGCTGAACTATCGCGATGATATCTATCAGTACGATCTCGTGGATGATCACA
AAGGCTGA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: L,D-transpeptidase YcbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 534

Protein sequence:
NA

Sequences:

>Translated_535_residues
MGNLPYLLSGLSSQGAEMRWQRVLLLIGIFFSSPTWSLTGLEEKQWLDGNSAVFAYVQFPEHVERLYQGNHHRLIWSDNE
ATSQLEFQLELIKTASVSPYFDYQISKLRRYKNEQKWFEYDIVATDLLLSYISYLEKLPQHGKEWLFTQPLSQSLPAPSY
SSMNRLSADIQAGYLATFVRSLRSPLQRHQQFANRYSRLLKARDHAVPLFHQVGLLKLGDKLPDRANLIKRLEVVGLETS
HLKRDIKYYDTQLELAVKQFQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEERDLLVLVNVPGYEMKF
WYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVKDILPKVKYDQSFLTKQNIEIVEGWDSQTAVNPQT
IDWTKVSLKSFPYKMRQLAGDKNALGLYKFNIPNKRAIFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLKTQGLE
EELSNLATRQEANTMIPLKRRIPVHIIYQTVWFEGEELNYRDDIYQYDLVDDHKG
>Mature_534_residues
GNLPYLLSGLSSQGAEMRWQRVLLLIGIFFSSPTWSLTGLEEKQWLDGNSAVFAYVQFPEHVERLYQGNHHRLIWSDNEA
TSQLEFQLELIKTASVSPYFDYQISKLRRYKNEQKWFEYDIVATDLLLSYISYLEKLPQHGKEWLFTQPLSQSLPAPSYS
SMNRLSADIQAGYLATFVRSLRSPLQRHQQFANRYSRLLKARDHAVPLFHQVGLLKLGDKLPDRANLIKRLEVVGLETSH
LKRDIKYYDTQLELAVKQFQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEERDLLVLVNVPGYEMKFW
YKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVKDILPKVKYDQSFLTKQNIEIVEGWDSQTAVNPQTI
DWTKVSLKSFPYKMRQLAGDKNALGLYKFNIPNKRAIFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLKTQGLEE
ELSNLATRQEANTMIPLKRRIPVHIIYQTVWFEGEELNYRDDIYQYDLVDDHKG

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=512, Percent_Identity=32.421875, Blast_Score=292, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 62084; Mature: 61953

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNLPYLLSGLSSQGAEMRWQRVLLLIGIFFSSPTWSLTGLEEKQWLDGNSAVFAYVQFP
CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCCEEEEEEECH
EHVERLYQGNHHRLIWSDNEATSQLEFQLELIKTASVSPYFDYQISKLRRYKNEQKWFEY
HHHHHHHCCCCCEEEECCCCCCCHHEEEEEEEHHCCCCCCHHHHHHHHHHHHCCCHHEEH
DIVATDLLLSYISYLEKLPQHGKEWLFTQPLSQSLPAPSYSSMNRLSADIQAGYLATFVR
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
SLRSPLQRHQQFANRYSRLLKARDHAVPLFHQVGLLKLGDKLPDRANLIKRLEVVGLETS
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
HLKRDIKYYDTQLELAVKQFQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHC
WPEERDLLVLVNVPGYEMKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVP
CCCCCCEEEEEECCCCEEEEEECCHHHHHHHHEECCCCCCCCEEEECCCCEEECCCCCCC
KTIMVKDILPKVKYDQSFLTKQNIEIVEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAG
HHHHHHHHHCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCEEHHHHHCCHHHHHHCC
DKNALGLYKFNIPNKRAIFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLKTQGLE
CCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCHH
EELSNLATRQEANTMIPLKRRIPVHIIYQTVWFEGEELNYRDDIYQYDLVDDHKG
HHHHHHHHHHHCCCCCCHHHCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
GNLPYLLSGLSSQGAEMRWQRVLLLIGIFFSSPTWSLTGLEEKQWLDGNSAVFAYVQFP
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCCEEEEEEECH
EHVERLYQGNHHRLIWSDNEATSQLEFQLELIKTASVSPYFDYQISKLRRYKNEQKWFEY
HHHHHHHCCCCCEEEECCCCCCCHHEEEEEEEHHCCCCCCHHHHHHHHHHHHCCCHHEEH
DIVATDLLLSYISYLEKLPQHGKEWLFTQPLSQSLPAPSYSSMNRLSADIQAGYLATFVR
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
SLRSPLQRHQQFANRYSRLLKARDHAVPLFHQVGLLKLGDKLPDRANLIKRLEVVGLETS
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
HLKRDIKYYDTQLELAVKQFQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHC
WPEERDLLVLVNVPGYEMKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVP
CCCCCCEEEEEECCCCEEEEEECCHHHHHHHHEECCCCCCCCEEEECCCCEEECCCCCCC
KTIMVKDILPKVKYDQSFLTKQNIEIVEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAG
HHHHHHHHHCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCEEHHHHHCCHHHHHHCC
DKNALGLYKFNIPNKRAIFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLKTQGLE
CCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCHH
EELSNLATRQEANTMIPLKRRIPVHIIYQTVWFEGEELNYRDDIYQYDLVDDHKG
HHHHHHHHHHHCCCCCCHHHCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]