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The map label for this gene is rsmD [H]

Identifier: 326423802

GI number: 326423802

Start: 1148773

End: 1149366

Strand: Reverse

Name: rsmD [H]

Synonym: NA

Alternate gene names: 326423802

Gene position: 1149366-1148773 (Counterclockwise)

Preceding gene: 27364578

Following gene: 27364569

Centisome position: 35.02

GC content: 49.66

Gene sequence:

>594_bases
ATGGTAAGACGTCGCCAGCAAAACACATCACAAAATAAGCCAACAACTGGCTGTGTACGCATCATTAGTGGCCTTTGGCG
AGGGCGAAAGCTGCCCGTGCATGACGCCGAAGGCTTGCGCCCTACAACTGACCGAGTCAAAGAAACGCTGTTTAACTGGT
TAGCACAGGATATCCCTCGCGCTCGCTGTTTGGATCTGTTTGCCGGCTCTGGCGGCTTAGGTTTTGAAGCGGCATCACGT
CAGGCAGAGCAAGTCACCATGTTGGAGTTAAACCCCAAAGCGTTTGCTCAATTGCAACAAAATGTCACAGCACTAAAGGC
AAATAATATCAAAGTGATTCAAGGCGATGCACTGCAATTCCTTAAGCAGCAAGGCACACCGCATCACGTGGTGTTTATTG
ACCCGCCATTTCGCCAAGGACTGCTTGCCGAAGCCGTGACTTTGCTGGAGCAAAATGGCTGGCTGGCAGAGGATGCAATG
ATTTATATTGAGACAGAAAAAGAGTTACAGGTTGAAGCGCTGCCAGCTTCTTGGCATTTGCATCGAGAAAAAACTGCTGG
ACAGGTCAGCTATCGCCTCTATGAACGCCAATAG

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: ribosomal RNA small subunit methyltransferase D

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:
NA

Sequences:

>Translated_197_residues
MVRRRQQNTSQNKPTTGCVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQDIPRARCLDLFAGSGGLGFEAASR
QAEQVTMLELNPKAFAQLQQNVTALKANNIKVIQGDALQFLKQQGTPHHVVFIDPPFRQGLLAEAVTLLEQNGWLAEDAM
IYIETEKELQVEALPASWHLHREKTAGQVSYRLYERQ
>Mature_197_residues
MVRRRQQNTSQNKPTTGCVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQDIPRARCLDLFAGSGGLGFEAASR
QAEQVTMLELNPKAFAQLQQNVTALKANNIKVIQGDALQFLKQQGTPHHVVFIDPPFRQGLLAEAVTLLEQNGWLAEDAM
IYIETEKELQVEALPASWHLHREKTAGQVSYRLYERQ

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=186, Percent_Identity=58.6021505376344, Blast_Score=238, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 22297; Mature: 22297

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS00092 N6_MTASE ; PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRRRQQNTSQNKPTTGCVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQDIPR
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
ARCLDLFAGSGGLGFEAASRQAEQVTMLELNPKAFAQLQQNVTALKANNIKVIQGDALQF
HHHHHHHCCCCCCCCHHHHCHHHEEEEEEECHHHHHHHHHHHHEEECCCEEEEECHHHHH
LKQQGTPHHVVFIDPPFRQGLLAEAVTLLEQNGWLAEDAMIYIETEKELQVEALPASWHL
HHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEECCEEEEEECCCCEEEEECCCHHEE
HREKTAGQVSYRLYERQ
HHHHCCCCEEEEEECCC
>Mature Secondary Structure
MVRRRQQNTSQNKPTTGCVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQDIPR
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
ARCLDLFAGSGGLGFEAASRQAEQVTMLELNPKAFAQLQQNVTALKANNIKVIQGDALQF
HHHHHHHCCCCCCCCHHHHCHHHEEEEEEECHHHHHHHHHHHHEEECCCEEEEECHHHHH
LKQQGTPHHVVFIDPPFRQGLLAEAVTLLEQNGWLAEDAMIYIETEKELQVEALPASWHL
HHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEECCEEEEEECCCCEEEEECCCHHEE
HREKTAGQVSYRLYERQ
HHHHCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]