Click here to switch to the map view.

The map label for this gene is xerD

Identifier: 32267344

GI number: 32267344

Start: 1765915

End: 1767003

Strand: Direct

Name: xerD

Synonym: HH1845

Alternate gene names: 32267344

Gene position: 1765915-1767003 (Clockwise)

Preceding gene: 32267342

Following gene: 32267345

Centisome position: 98.15

GC content: 34.53

Gene sequence:

>1089_bases
ATGAAATATCCGCTTAATTATAAAAATGAATTTTCTTCTAGTTTGCTTTTTTGGATTACGAGATTTATACGTTATAAGCT
TACAACACTATCTAACCATCAAGTAAATGATAAATCAAGCATTCTTCAGGCAATAAATACATTAAGTAATGATAAAATAA
GTAATATAGATGAATTAGAAAATATCTGTAAAAAAGCGAGAAAAGCGGGTATGATAGGGATTAATACTTACTCTACCCCG
CTACTCAAACTTTACGCTTTCCTTACGCAAAGCTCTATTGATACAATGGAGGATATTGATGAGGAAGTATTAAGCGATTT
TTTAAGTGTGGAGACAAGTGCTCTTTCTAACGCAAGTAAAAAAAACTATCGCATTGCTCTCATTGGTTTTTTTGGTTATA
TTGATAAGCAAAATGAGAGTGATGGTGCATCTTATGTATATGATATTACACTCAAAATCAGCTCATTACAAGGCAAAAGT
GGACAAAAACTCCCCTCATTTTTAAATCAAAAAGAATTAGAACAATTCTTGCGCGCTATTGATGAATCTCAACTTGGGGA
AAAAGTCGCTGCGCGTAACAAACTTATTATCAAACTCATTGTTTATACAGGCATACGCGTAAGTGAAGCTCTTAATCTCC
GCTGTAAAGATATTTTACCAGCTAAAGACTGCTATCTTATAAGTATTCGCGGTAAAGGCAACAAGCCGCGTGTAGTAATG
ATACGACAATCCCATATTCAGAATCTTCTTAATACCTGGCTTACGCAACGTTTGGGTTTTTCTCCAATGCACGATTTACT
CTTTTGTAATGCCAAGGGAAAAGCCCTCACGCAGAGCTATATTTATAAAAATGTGGAGAATATTTTAACTCAAGCAGGGA
TTCGTAAAGAAAAAAATGGCGCACATATGCTACGGCACTCTTTTGCTACCCTGCTCTATCAGCAAAAACACGATTTAGTA
ATGGTGCAAGAAGCACTTGGACATTCGGATTTAAATACAAGTCGTATTTATACGCATTTTGATATGGAACGTTTGCAAGA
AGTTGTCAGTGTAATGGATAATATATCCAATAAAACTCATTCTACTTAA

Upstream 100 bases:

>100_bases
AAACCTTGTAATCTTGACTTGAGAGATACAAAATCGTATAATCCTGTAATTTTGATATTTACTCGGGCAAAGGCACAAGA
ATAAGGAAAATGACAAACAA

Downstream 100 bases:

>100_bases
AGGGGCATTATGAACTCTCCTTTATATCTTACTCCAAAAGCCAGTAATCTTGCAATGTGTCTCATAAGCGTATGTGCTTT
AATTTTATGGCTTTATGAAC

Product: integrase/recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MKYPLNYKNEFSSSLLFWITRFIRYKLTTLSNHQVNDKSSILQAINTLSNDKISNIDELENICKKARKAGMIGINTYSTP
LLKLYAFLTQSSIDTMEDIDEEVLSDFLSVETSALSNASKKNYRIALIGFFGYIDKQNESDGASYVYDITLKISSLQGKS
GQKLPSFLNQKELEQFLRAIDESQLGEKVAARNKLIIKLIVYTGIRVSEALNLRCKDILPAKDCYLISIRGKGNKPRVVM
IRQSHIQNLLNTWLTQRLGFSPMHDLLFCNAKGKALTQSYIYKNVENILTQAGIRKEKNGAHMLRHSFATLLYQQKHDLV
MVQEALGHSDLNTSRIYTHFDMERLQEVVSVMDNISNKTHST

Sequences:

>Translated_362_residues
MKYPLNYKNEFSSSLLFWITRFIRYKLTTLSNHQVNDKSSILQAINTLSNDKISNIDELENICKKARKAGMIGINTYSTP
LLKLYAFLTQSSIDTMEDIDEEVLSDFLSVETSALSNASKKNYRIALIGFFGYIDKQNESDGASYVYDITLKISSLQGKS
GQKLPSFLNQKELEQFLRAIDESQLGEKVAARNKLIIKLIVYTGIRVSEALNLRCKDILPAKDCYLISIRGKGNKPRVVM
IRQSHIQNLLNTWLTQRLGFSPMHDLLFCNAKGKALTQSYIYKNVENILTQAGIRKEKNGAHMLRHSFATLLYQQKHDLV
MVQEALGHSDLNTSRIYTHFDMERLQEVVSVMDNISNKTHST
>Mature_362_residues
MKYPLNYKNEFSSSLLFWITRFIRYKLTTLSNHQVNDKSSILQAINTLSNDKISNIDELENICKKARKAGMIGINTYSTP
LLKLYAFLTQSSIDTMEDIDEEVLSDFLSVETSALSNASKKNYRIALIGFFGYIDKQNESDGASYVYDITLKISSLQGKS
GQKLPSFLNQKELEQFLRAIDESQLGEKVAARNKLIIKLIVYTGIRVSEALNLRCKDILPAKDCYLISIRGKGNKPRVVM
IRQSHIQNLLNTWLTQRLGFSPMHDLLFCNAKGKALTQSYIYKNVENILTQAGIRKEKNGAHMLRHSFATLLYQQKHDLV
MVQEALGHSDLNTSRIYTHFDMERLQEVVSVMDNISNKTHST

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=196, Percent_Identity=32.6530612244898, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790244, Length=288, Percent_Identity=27.7777777777778, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41281; Mature: 41281

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYPLNYKNEFSSSLLFWITRFIRYKLTTLSNHQVNDKSSILQAINTLSNDKISNIDELE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
NICKKARKAGMIGINTYSTPLLKLYAFLTQSSIDTMEDIDEEVLSDFLSVETSALSNASK
HHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
KNYRIALIGFFGYIDKQNESDGASYVYDITLKISSLQGKSGQKLPSFLNQKELEQFLRAI
CCEEEEEEEEEHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHCCHHHHHHHHHHH
DESQLGEKVAARNKLIIKLIVYTGIRVSEALNLRCKDILPAKDCYLISIRGKGNKPRVVM
HHHHHHHHHHHCCHHHEEHHHHHCCHHHHHHCCHHHCCCCCCCEEEEEEECCCCCCCEEE
IRQSHIQNLLNTWLTQRLGFSPMHDLLFCNAKGKALTQSYIYKNVENILTQAGIRKEKNG
EHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
AHMLRHSFATLLYQQKHDLVMVQEALGHSDLNTSRIYTHFDMERLQEVVSVMDNISNKTH
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCC
ST
CC
>Mature Secondary Structure
MKYPLNYKNEFSSSLLFWITRFIRYKLTTLSNHQVNDKSSILQAINTLSNDKISNIDELE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
NICKKARKAGMIGINTYSTPLLKLYAFLTQSSIDTMEDIDEEVLSDFLSVETSALSNASK
HHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
KNYRIALIGFFGYIDKQNESDGASYVYDITLKISSLQGKSGQKLPSFLNQKELEQFLRAI
CCEEEEEEEEEHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHCCHHHHHHHHHHH
DESQLGEKVAARNKLIIKLIVYTGIRVSEALNLRCKDILPAKDCYLISIRGKGNKPRVVM
HHHHHHHHHHHCCHHHEEHHHHHCCHHHHHHCCHHHCCCCCCCEEEEEEECCCCCCCEEE
IRQSHIQNLLNTWLTQRLGFSPMHDLLFCNAKGKALTQSYIYKNVENILTQAGIRKEKNG
EHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
AHMLRHSFATLLYQQKHDLVMVQEALGHSDLNTSRIYTHFDMERLQEVVSVMDNISNKTH
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCC
ST
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]