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The map label for this gene is nlpC [H]

Identifier: 32267320

GI number: 32267320

Start: 1741519

End: 1742238

Strand: Direct

Name: nlpC [H]

Synonym: HH1821

Alternate gene names: 32267320

Gene position: 1741519-1742238 (Clockwise)

Preceding gene: 32267319

Following gene: 32267321

Centisome position: 96.8

GC content: 34.17

Gene sequence:

>720_bases
ATGAAAATAAAACTCTATGTATTATCTTTGTTATGTTTAATTATTATTGTTTTTTATGGCGGTTGTGCTTTGAGTGTGCC
AAAATCTCCTTTATATAATGTGCAGGTGGGAAGTTTTAATAGTGTAGAGAATGCTGGGCGATTGGTGGATTCTCTTAATC
AAAAAGGACTTGATGCATTTTTATTTAAAGAAGCTGGAATGTATAAAGTGCGCTTTGGGAATTATCAAAGTTTTGAAGAT
GCAAAAATAAGAGCACAAGAGTATCAAAAACAAGGGCTCATTAATGAGTTTTTTATTGTTTCTCCACAAGTTTATGCACT
CAAAACATCTAAGCGCAAAAAATCAAATGATATTAGAGATGACATTGTAGAGAGTGCTCATCAATATCTTGGTGTGCCAT
ATAAATGGGGAGGCACTTCAGAATCTGGATTTGATTGCAGTGGGCTGACACGTGCAATTTATCGTCTTAATGGTATTTCT
CTTCCGCGCGCTTCATATGAGCAATACAATGATGGAAGCTCTGTTACAAAATCTAAGCTTCAAAAGGGTGATTTGGTATT
TTTTACCACAAATAGAAGTAAAAGAATAAATCACGTTGGTGTTTATATTGGTAACAATGAGTTTATTCACGCTCCAAGTA
AAGGGAAAGTAGTAAGTAAGGCGCGATTAGATTCAGCTTATTGGAACAAAACTTATAAAGGTGCAAGGAGTTATTTTTAA

Upstream 100 bases:

>100_bases
GAAATGCTTTTTTAGGTAAAGAAAGTTGGGTATCTTTAGGATTACGCTTTTTAGCTCCACCGATGTTTTAATTATATAGA
ATCTACACATAAGGATTAAA

Downstream 100 bases:

>100_bases
TTTGTTTGTAAAAGCCATTTGCAAGTTTTTACTTGGGATTTCATAATATTTTTATAAATTTAATGCTACTCTATGGTATT
TACTAAATAAGGAGATGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKIKLYVLSLLCLIIIVFYGGCALSVPKSPLYNVQVGSFNSVENAGRLVDSLNQKGLDAFLFKEAGMYKVRFGNYQSFED
AKIRAQEYQKQGLINEFFIVSPQVYALKTSKRKKSNDIRDDIVESAHQYLGVPYKWGGTSESGFDCSGLTRAIYRLNGIS
LPRASYEQYNDGSSVTKSKLQKGDLVFFTTNRSKRINHVGVYIGNNEFIHAPSKGKVVSKARLDSAYWNKTYKGARSYF

Sequences:

>Translated_239_residues
MKIKLYVLSLLCLIIIVFYGGCALSVPKSPLYNVQVGSFNSVENAGRLVDSLNQKGLDAFLFKEAGMYKVRFGNYQSFED
AKIRAQEYQKQGLINEFFIVSPQVYALKTSKRKKSNDIRDDIVESAHQYLGVPYKWGGTSESGFDCSGLTRAIYRLNGIS
LPRASYEQYNDGSSVTKSKLQKGDLVFFTTNRSKRINHVGVYIGNNEFIHAPSKGKVVSKARLDSAYWNKTYKGARSYF
>Mature_239_residues
MKIKLYVLSLLCLIIIVFYGGCALSVPKSPLYNVQVGSFNSVENAGRLVDSLNQKGLDAFLFKEAGMYKVRFGNYQSFED
AKIRAQEYQKQGLINEFFIVSPQVYALKTSKRKKSNDIRDDIVESAHQYLGVPYKWGGTSESGFDCSGLTRAIYRLNGIS
LPRASYEQYNDGSSVTKSKLQKGDLVFFTTNRSKRINHVGVYIGNNEFIHAPSKGKVVSKARLDSAYWNKTYKGARSYF

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=121, Percent_Identity=40.495867768595, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787944, Length=113, Percent_Identity=44.2477876106195, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1786421, Length=141, Percent_Identity=37.5886524822695, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788001, Length=118, Percent_Identity=40.6779661016949, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 26932; Mature: 26932

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKLYVLSLLCLIIIVFYGGCALSVPKSPLYNVQVGSFNSVENAGRLVDSLNQKGLDAF
CEEHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE
LFKEAGMYKVRFGNYQSFEDAKIRAQEYQKQGLINEFFIVSPQVYALKTSKRKKSNDIRD
EECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCCCCHHH
DIVESAHQYLGVPYKWGGTSESGFDCSGLTRAIYRLNGISLPRASYEQYNDGSSVTKSKL
HHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHH
QKGDLVFFTTNRSKRINHVGVYIGNNEFIHAPSKGKVVSKARLDSAYWNKTYKGARSYF
CCCCEEEEECCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIKLYVLSLLCLIIIVFYGGCALSVPKSPLYNVQVGSFNSVENAGRLVDSLNQKGLDAF
CEEHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE
LFKEAGMYKVRFGNYQSFEDAKIRAQEYQKQGLINEFFIVSPQVYALKTSKRKKSNDIRD
EECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCCCCHHH
DIVESAHQYLGVPYKWGGTSESGFDCSGLTRAIYRLNGISLPRASYEQYNDGSSVTKSKL
HHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHH
QKGDLVFFTTNRSKRINHVGVYIGNNEFIHAPSKGKVVSKARLDSAYWNKTYKGARSYF
CCCCEEEEECCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]