Click here to switch to the map view.

The map label for this gene is cdtC

Identifier: 32266947

GI number: 32266947

Start: 1396726

End: 1397277

Strand: Direct

Name: cdtC

Synonym: HH1448

Alternate gene names: NA

Gene position: 1396726-1397277 (Clockwise)

Preceding gene: 32266946

Following gene: 32266948

Centisome position: 77.63

GC content: 34.06

Gene sequence:

>552_bases
ATGAAAAAATTTACTTTATTATTCATTTTAATCTCAAGCTTTGTATATGGAGGTGGTCCTGAAGATTTACCAGATTTTAC
TGCACCATTTTCTCTAAGAAGCCTTGCAACAGGAGATTTGCTTGCTCCAGATTATAGAAAACCAAATTGGAATCTCAAGC
AAGTTGATCTTGATGAGCAGATCCGCAAAAGTGATCCTTTTGATAAGTTTAATTTAGGGGCTATGCAATTTGTTAATGCA
GATGATCCAAAGTCGTGCCTAGGGATTGATGAAAGCGGATTTTTTGCGCTTAAAAATTGTGAAGAGGATTTAAAAAGTAA
AAATTTTGAAACCGTATTTACAATTATTCCTACAACAAGTTCTGCGGTGCAAATTCGTTCTTTTGTTTTGGATAAAACAG
AATGTATTTCGGTGTTTTTTAACCCTCGCTTACCTTCAGGAAGGGGCATTGGCATTACTCCTTGTAGTGTAGATAAAATA
TTAACCATAAATTTGTATAAACTTATGCTCATTCTCCCTCCTTTAGTTGAGGCAAAAACTATTAATCCTTAA

Upstream 100 bases:

>100_bases
ATTGCCGCAAATTGCAGCAATACTTATGGCAGCAAATATACGCGCACACCTCTCATCTGACCATTCACCTGTGCATTTTG
GACGATTTTAGGAGGCATCA

Downstream 100 bases:

>100_bases
AAGTTTGCATAAAAGAAAGCTTGAGTTTGTGCGCAAAAGCAATCTCGATTGGCTCTATGTCAGCCCCGCAGCACTTTTTT
ATGAAGGTAAATCGCAAAAT

Product: cytolethal distending toxin CdtC

Products: NA

Alternate protein names: Cytolethal Distending xin A/C Family Protein; Cytolethal Distending xin Subunit C; Cytolethal Distending xin Subunit CdtC

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKKFTLLFILISSFVYGGGPEDLPDFTAPFSLRSLATGDLLAPDYRKPNWNLKQVDLDEQIRKSDPFDKFNLGAMQFVNA
DDPKSCLGIDESGFFALKNCEEDLKSKNFETVFTIIPTTSSAVQIRSFVLDKTECISVFFNPRLPSGRGIGITPCSVDKI
LTINLYKLMLILPPLVEAKTINP

Sequences:

>Translated_183_residues
MKKFTLLFILISSFVYGGGPEDLPDFTAPFSLRSLATGDLLAPDYRKPNWNLKQVDLDEQIRKSDPFDKFNLGAMQFVNA
DDPKSCLGIDESGFFALKNCEEDLKSKNFETVFTIIPTTSSAVQIRSFVLDKTECISVFFNPRLPSGRGIGITPCSVDKI
LTINLYKLMLILPPLVEAKTINP
>Mature_183_residues
MKKFTLLFILISSFVYGGGPEDLPDFTAPFSLRSLATGDLLAPDYRKPNWNLKQVDLDEQIRKSDPFDKFNLGAMQFVNA
DDPKSCLGIDESGFFALKNCEEDLKSKNFETVFTIIPTTSSAVQIRSFVLDKTECISVFFNPRLPSGRGIGITPCSVDKI
LTINLYKLMLILPPLVEAKTINP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20419; Mature: 20419

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFTLLFILISSFVYGGGPEDLPDFTAPFSLRSLATGDLLAPDYRKPNWNLKQVDLDEQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECHHHH
IRKSDPFDKFNLGAMQFVNADDPKSCLGIDESGFFALKNCEEDLKSKNFETVFTIIPTTS
HHHCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECCCC
SAVQIRSFVLDKTECISVFFNPRLPSGRGIGITPCSVDKILTINLYKLMLILPPLVEAKT
HHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCC
INP
CCC
>Mature Secondary Structure
MKKFTLLFILISSFVYGGGPEDLPDFTAPFSLRSLATGDLLAPDYRKPNWNLKQVDLDEQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECHHHH
IRKSDPFDKFNLGAMQFVNADDPKSCLGIDESGFFALKNCEEDLKSKNFETVFTIIPTTS
HHHCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECCCC
SAVQIRSFVLDKTECISVFFNPRLPSGRGIGITPCSVDKILTINLYKLMLILPPLVEAKT
HHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCC
INP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA