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The map label for this gene is rpoA

Identifier: 32266902

GI number: 32266902

Start: 1342245

End: 1343249

Strand: Direct

Name: rpoA

Synonym: HH1403

Alternate gene names: 32266902

Gene position: 1342245-1343249 (Clockwise)

Preceding gene: 32266901

Following gene: 32266903

Centisome position: 74.6

GC content: 36.02

Gene sequence:

>1005_bases
ATGAATATGATTAAAATTGAGCCTTATATCCCTACTGATATAAGCATTGAGGAAATTTCAACCAATAGAATCAGAATTAG
TGCTTATCCTTTTGAATCAGGTTATGCTATTACTCTTGCCCACCCTATTCGCCGATTACTTCTCTCAAGTTCTGTGGGGT
ATGCCCCTACGGCATTGAGGATTCAGGGTGTAACACACGAGTTTGATTCAATTAGAGGTATTGTAGAAGATGTGTCACAT
TTTATTACTAACCTCAAGAATATTCGCTTTCTTATTAAGGACACGGAGAGTGATAATGTGCAGCTTCACTATGAATTTAA
AGGTCCAATGGTTTTGAGTGCAAATGAGCTCGTTAATGATATGGTGGGGATTGTCAATCCCGAAGCGTATTTAGCAACAA
TTAATGAGAATGCCTCTTTGAGTTTTTCTCTTATCGTGCAAAAGGGTATTGGATATGTGCCAAGTGAAAGCATACGTGGT
AAAATTTCAGAGGATTATATCCCGCTTGATGCGTATTTTACGCCTGTAAAAAAAGCAGTGTATGAAATTGAAAATGTGCT
CGTTGAAGACAATCCAAATTATGAAAAAATTGTGTTTGATATTGAGACAGATGGGCAAATTGAACCTATAACAGCTTTTA
AAGAAGCCATAGCCATAATGCACAAACAAATGAGTATTTTTGGTGTGGATTTGAGCACTGCTTCTAGCGGCACAAGAAAT
ATTTCTGAAGATTCTGGAGAACTTAAAACTTTGATGATTAAAATAGACACACTCAATTTAAGTGCGCGTTGTTTTAATTG
TCTTGATAGGTCTGGTTTAAAATATGTTGGTGAGCTTGTGATTATGAGTGAGAATGAGCTTAAAAATATCAAAAATATGG
GTAAAAAATCTTATGATGAGATTGCAGATAAGCTTGAGGAGCTAGGATACCCTGTTGGTGGGGAAATTGCCGATGATATC
TTGCCATTACTCAATCGTAAGTTAGCCAAACTTAAAAGTAATTAA

Upstream 100 bases:

>100_bases
GCGTTTTCCACAAAGGGAAGAGGTTGTAATACCTATTGAAGAAAGACTAATCGTTGAGCTTTACTCTAAATAAGAAATAA
AACATAAGGATGGTTGTAGA

Downstream 100 bases:

>100_bases
TTGGGAGCAAAACAATGAGACATAGACACGGATATAGGAAATTAGGACGGACTTCAGCTCATCGCAAGGCATTGCTTAAG
AATCTTGCTATTGCACTTAT

Product: DNA-directed RNA polymerase subunit alpha

Products: NA

Alternate protein names: RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MNMIKIEPYIPTDISIEEISTNRIRISAYPFESGYAITLAHPIRRLLLSSSVGYAPTALRIQGVTHEFDSIRGIVEDVSH
FITNLKNIRFLIKDTESDNVQLHYEFKGPMVLSANELVNDMVGIVNPEAYLATINENASLSFSLIVQKGIGYVPSESIRG
KISEDYIPLDAYFTPVKKAVYEIENVLVEDNPNYEKIVFDIETDGQIEPITAFKEAIAIMHKQMSIFGVDLSTASSGTRN
ISEDSGELKTLMIKIDTLNLSARCFNCLDRSGLKYVGELVIMSENELKNIKNMGKKSYDEIADKLEELGYPVGGEIADDI
LPLLNRKLAKLKSN

Sequences:

>Translated_334_residues
MNMIKIEPYIPTDISIEEISTNRIRISAYPFESGYAITLAHPIRRLLLSSSVGYAPTALRIQGVTHEFDSIRGIVEDVSH
FITNLKNIRFLIKDTESDNVQLHYEFKGPMVLSANELVNDMVGIVNPEAYLATINENASLSFSLIVQKGIGYVPSESIRG
KISEDYIPLDAYFTPVKKAVYEIENVLVEDNPNYEKIVFDIETDGQIEPITAFKEAIAIMHKQMSIFGVDLSTASSGTRN
ISEDSGELKTLMIKIDTLNLSARCFNCLDRSGLKYVGELVIMSENELKNIKNMGKKSYDEIADKLEELGYPVGGEIADDI
LPLLNRKLAKLKSN
>Mature_334_residues
MNMIKIEPYIPTDISIEEISTNRIRISAYPFESGYAITLAHPIRRLLLSSSVGYAPTALRIQGVTHEFDSIRGIVEDVSH
FITNLKNIRFLIKDTESDNVQLHYEFKGPMVLSANELVNDMVGIVNPEAYLATINENASLSFSLIVQKGIGYVPSESIRG
KISEDYIPLDAYFTPVKKAVYEIENVLVEDNPNYEKIVFDIETDGQIEPITAFKEAIAIMHKQMSIFGVDLSTASSGTRN
ISEDSGELKTLMIKIDTLNLSARCFNCLDRSGLKYVGELVIMSENELKNIKNMGKKSYDEIADKLEELGYPVGGEIADDI
LPLLNRKLAKLKSN

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0202

COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase alpha chain family

Homologues:

Organism=Escherichia coli, GI1789690, Length=311, Percent_Identity=33.7620578778135, Blast_Score=168, Evalue=4e-43,

Paralogues:

None

Copy number: 850 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 560 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 6847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 7,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): RPOA_HELHP (Q7VGB9)

Other databases:

- EMBL:   AE017125
- RefSeq:   NP_860934.1
- ProteinModelPortal:   Q7VGB9
- GeneID:   1493091
- GenomeReviews:   AE017125_GR
- KEGG:   hhe:HH1403
- NMPDR:   fig|235279.1.peg.1403
- HOGENOM:   HBG430844
- OMA:   FGTTLGN
- ProtClustDB:   PRK05182
- BioCyc:   HHEP235279:HH_1403-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00059
- InterPro:   IPR011261
- InterPro:   IPR011262
- InterPro:   IPR009025
- InterPro:   IPR011263
- InterPro:   IPR011260
- InterPro:   IPR011773
- Gene3D:   G3DSA:2.170.120.12
- ProDom:   PD001179
- SMART:   SM00662
- TIGRFAMs:   TIGR02027

Pfam domain/function: PF01000 RNA_pol_A_bac; PF03118 RNA_pol_A_CTD; PF01193 RNA_pol_L; SSF47789 RNAP_alpha_C; SSF56553 RNAP_insert; SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 37309; Mature: 37309

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMIKIEPYIPTDISIEEISTNRIRISAYPFESGYAITLAHPIRRLLLSSSVGYAPTALR
CCEEEECCCCCCCCCCEEECCCEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCCCCEEE
IQGVTHEFDSIRGIVEDVSHFITNLKNIRFLIKDTESDNVQLHYEFKGPMVLSANELVND
EECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCCEEEEHHHHHHH
MVGIVNPEAYLATINENASLSFSLIVQKGIGYVPSESIRGKISEDYIPLDAYFTPVKKAV
HHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCHHHCCCCCCCEEECHHHHHHHHHHH
YEIENVLVEDNPNYEKIVFDIETDGQIEPITAFKEAIAIMHKQMSIFGVDLSTASSGTRN
HHHHHEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCC
ISEDSGELKTLMIKIDTLNLSARCFNCLDRSGLKYVGELVIMSENELKNIKNMGKKSYDE
CCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCHHEEEEEEEECCHHHHHHHHCCCCHHHH
IADKLEELGYPVGGEIADDILPLLNRKLAKLKSN
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNMIKIEPYIPTDISIEEISTNRIRISAYPFESGYAITLAHPIRRLLLSSSVGYAPTALR
CCEEEECCCCCCCCCCEEECCCEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCCCCEEE
IQGVTHEFDSIRGIVEDVSHFITNLKNIRFLIKDTESDNVQLHYEFKGPMVLSANELVND
EECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCCEEEEHHHHHHH
MVGIVNPEAYLATINENASLSFSLIVQKGIGYVPSESIRGKISEDYIPLDAYFTPVKKAV
HHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCHHHCCCCCCCEEECHHHHHHHHHHH
YEIENVLVEDNPNYEKIVFDIETDGQIEPITAFKEAIAIMHKQMSIFGVDLSTASSGTRN
HHHHHEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCC
ISEDSGELKTLMIKIDTLNLSARCFNCLDRSGLKYVGELVIMSENELKNIKNMGKKSYDE
CCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCHHEEEEEEEECCHHHHHHHHCCCCHHHH
IADKLEELGYPVGGEIADDILPLLNRKLAKLKSN
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954