| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is engD [H]
Identifier: 32266872
GI number: 32266872
Start: 1326545
End: 1327645
Strand: Direct
Name: engD [H]
Synonym: HH1373
Alternate gene names: 32266872
Gene position: 1326545-1327645 (Clockwise)
Preceding gene: 32266871
Following gene: 32266876
Centisome position: 73.73
GC content: 38.87
Gene sequence:
>1101_bases ATGGGATTATCAATCGGTATTGTAGGGTTGCCAAATGTTGGTAAATCTACGACTTTTAATGCTCTCACAAAAGCACAAAA TGCGGAGGCAGCAAATTATCCTTTTTGCACGATTGAGCCAAATAAGGCAGTTGTGAGTGTGCCTGATGTAAGGTTGCAAG AGTTGGCTAAAATTGTCAATCCTCAAAAGATTCAGCACTCTGTCGTGGAGTTTGTGGATATTGCCGGACTTGTGCGAGGT GCGAGTAAAGGTGAGGGATTAGGCAATCAATTTTTAGCAAATATTAAAGAATGTAATATGATTTTGCATATCGTGCGGTG TTTTGAGGATTCTAATATCACGCATATTGAGGGGCGCATTGACCCGATTGATGATATTGAAATTATTGAGTTAGAACTGC TTTTTGCCGATATGGCAAGTTTAAATAAACGCATTGAGAAACTCCAAAGAGAGAGCAAATCTCAAAAAGGCGTAAATACT CAACTTACTCTCTGCCAAGAGCTTTTAGCGCATTTAGAATCTAATAAGCCCGTGCGAAGCTTTGCTAAACGTGAAAGTGA GGAATTTATCGCACTCAATAAGGATTTAAGATTTTTAACCAATAAAGAAGTGATTTATGGGGCAAATGTCAATGAAGAGG GCTTAGAATCTGATAATGAGTTTGTGCAAAAAGTGCGTGAATATGCAGCGCAAAATGATGGTATAGCAATTAAGCTGTGT GCAAAGATTGAAGAGGAAATGGTAGATATGAGTGATGATGAGCGCACAGAGTTTTTAGTAAGTCTTGGAGCAAAGCAGAG TGGATTAACGCAGATTATTAGAGAGGGATTTGCACGACTTGGGCTTATAAGTTATTTTACTGCAGGTGTCAAAGAAGTGC GAGCTTGGAGCATTAGAAAAGGAGATAGTGCGCCAAAAGCTGCAAGTGTGATACATAAAGACTTTGAAAAAGGTTTTATT CGTGCGGAGTGTATCAGTTATGCAGATTTTATTAAATATGGTGGCGAGGCAAAAGCAAAAGAAGCTGGGGCTATGCGTAT TGAAGGTAAAGAATATATCGTGCAAGATGGTGATGTAATGCACTTTAGATTCAATGTCTAA
Upstream 100 bases:
>100_bases CGCGTATGTGGAAAAAGAGTGGGATATTAACCCAAGTGGAGCGAGTGGTGCAGGCGTGAGGGCAGGAATAGAATTTATTT TAGCACAAGGAAAAGCATAA
Downstream 100 bases:
>100_bases CCTTGCATTTACAAAAAAAAAAAAAAAACGATACAATACGCAGATGAAAGATGCTTCATACAGAGAGGGGTATAATGCAA AACACACAAGAAAAGATAGT
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MGLSIGIVGLPNVGKSTTFNALTKAQNAEAANYPFCTIEPNKAVVSVPDVRLQELAKIVNPQKIQHSVVEFVDIAGLVRG ASKGEGLGNQFLANIKECNMILHIVRCFEDSNITHIEGRIDPIDDIEIIELELLFADMASLNKRIEKLQRESKSQKGVNT QLTLCQELLAHLESNKPVRSFAKRESEEFIALNKDLRFLTNKEVIYGANVNEEGLESDNEFVQKVREYAAQNDGIAIKLC AKIEEEMVDMSDDERTEFLVSLGAKQSGLTQIIREGFARLGLISYFTAGVKEVRAWSIRKGDSAPKAASVIHKDFEKGFI RAECISYADFIKYGGEAKAKEAGAMRIEGKEYIVQDGDVMHFRFNV
Sequences:
>Translated_366_residues MGLSIGIVGLPNVGKSTTFNALTKAQNAEAANYPFCTIEPNKAVVSVPDVRLQELAKIVNPQKIQHSVVEFVDIAGLVRG ASKGEGLGNQFLANIKECNMILHIVRCFEDSNITHIEGRIDPIDDIEIIELELLFADMASLNKRIEKLQRESKSQKGVNT QLTLCQELLAHLESNKPVRSFAKRESEEFIALNKDLRFLTNKEVIYGANVNEEGLESDNEFVQKVREYAAQNDGIAIKLC AKIEEEMVDMSDDERTEFLVSLGAKQSGLTQIIREGFARLGLISYFTAGVKEVRAWSIRKGDSAPKAASVIHKDFEKGFI RAECISYADFIKYGGEAKAKEAGAMRIEGKEYIVQDGDVMHFRFNV >Mature_365_residues GLSIGIVGLPNVGKSTTFNALTKAQNAEAANYPFCTIEPNKAVVSVPDVRLQELAKIVNPQKIQHSVVEFVDIAGLVRGA SKGEGLGNQFLANIKECNMILHIVRCFEDSNITHIEGRIDPIDDIEIIELELLFADMASLNKRIEKLQRESKSQKGVNTQ LTLCQELLAHLESNKPVRSFAKRESEEFIALNKDLRFLTNKEVIYGANVNEEGLESDNEFVQKVREYAAQNDGIAIKLCA KIEEEMVDMSDDERTEFLVSLGAKQSGLTQIIREGFARLGLISYFTAGVKEVRAWSIRKGDSAPKAASVIHKDFEKGFIR AECISYADFIKYGGEAKAKEAGAMRIEGKEYIVQDGDVMHFRFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=372, Percent_Identity=44.6236559139785, Blast_Score=300, Evalue=1e-81, Organism=Homo sapiens, GI58761502, Length=206, Percent_Identity=40.7766990291262, Blast_Score=154, Evalue=2e-37, Organism=Escherichia coli, GI1787454, Length=367, Percent_Identity=53.9509536784741, Blast_Score=395, Evalue=1e-111, Organism=Escherichia coli, GI1789574, Length=138, Percent_Identity=34.0579710144928, Blast_Score=74, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17509631, Length=368, Percent_Identity=42.3913043478261, Blast_Score=287, Evalue=5e-78, Organism=Saccharomyces cerevisiae, GI6319499, Length=373, Percent_Identity=36.9973190348526, Blast_Score=228, Evalue=1e-60, Organism=Saccharomyces cerevisiae, GI6321773, Length=380, Percent_Identity=35.7894736842105, Blast_Score=212, Evalue=9e-56, Organism=Saccharomyces cerevisiae, GI6321649, Length=426, Percent_Identity=26.2910798122066, Blast_Score=96, Evalue=1e-20, Organism=Drosophila melanogaster, GI24640873, Length=372, Percent_Identity=41.3978494623656, Blast_Score=278, Evalue=4e-75, Organism=Drosophila melanogaster, GI24640877, Length=372, Percent_Identity=41.3978494623656, Blast_Score=278, Evalue=4e-75, Organism=Drosophila melanogaster, GI24640875, Length=372, Percent_Identity=41.3978494623656, Blast_Score=278, Evalue=4e-75, Organism=Drosophila melanogaster, GI24640879, Length=330, Percent_Identity=38.4848484848485, Blast_Score=224, Evalue=6e-59,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 40708; Mature: 40577
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLSIGIVGLPNVGKSTTFNALTKAQNAEAANYPFCTIEPNKAVVSVPDVRLQELAKIVN CCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHC PQKIQHSVVEFVDIAGLVRGASKGEGLGNQFLANIKECNMILHIVRCFEDSNITHIEGRI HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC DPIDDIEIIELELLFADMASLNKRIEKLQRESKSQKGVNTQLTLCQELLAHLESNKPVRS CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH FAKRESEEFIALNKDLRFLTNKEVIYGANVNEEGLESDNEFVQKVREYAAQNDGIAIKLC HHHCCCHHEEEECCCHHHCCCCCEEEECCCCHHCCCCHHHHHHHHHHHHCCCCCEEEEEH AKIEEEMVDMSDDERTEFLVSLGAKQSGLTQIIREGFARLGLISYFTAGVKEVRAWSIRK HHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GDSAPKAASVIHKDFEKGFIRAECISYADFIKYGGEAKAKEAGAMRIEGKEYIVQDGDVM CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCEEECCCEEEEECCCEE HFRFNV EEEECC >Mature Secondary Structure GLSIGIVGLPNVGKSTTFNALTKAQNAEAANYPFCTIEPNKAVVSVPDVRLQELAKIVN CCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHC PQKIQHSVVEFVDIAGLVRGASKGEGLGNQFLANIKECNMILHIVRCFEDSNITHIEGRI HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC DPIDDIEIIELELLFADMASLNKRIEKLQRESKSQKGVNTQLTLCQELLAHLESNKPVRS CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH FAKRESEEFIALNKDLRFLTNKEVIYGANVNEEGLESDNEFVQKVREYAAQNDGIAIKLC HHHCCCHHEEEECCCHHHCCCCCEEEECCCCHHCCCCHHHHHHHHHHHHCCCCCEEEEEH AKIEEEMVDMSDDERTEFLVSLGAKQSGLTQIIREGFARLGLISYFTAGVKEVRAWSIRK HHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GDSAPKAASVIHKDFEKGFIRAECISYADFIKYGGEAKAKEAGAMRIEGKEYIVQDGDVM CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCEEECCCEEEEECCCEE HFRFNV EEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA