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The map label for this gene is 32266728

Identifier: 32266728

GI number: 32266728

Start: 1195122

End: 1195538

Strand: Direct

Name: 32266728

Synonym: HH1229

Alternate gene names: NA

Gene position: 1195122-1195538 (Clockwise)

Preceding gene: 32266727

Following gene: 32266729

Centisome position: 66.43

GC content: 41.97

Gene sequence:

>417_bases
ATGAATCATTGCATTCTTGCGTGTGATGTGGGACTTAAGCGTATCGGCTTAGCCACACTCAAGCAAGAAATTATCCTCCC
TCTCCCTCCTATTATCCGTATTAATCGTAATCAAGCTGCAAAAGAGCTTGATAATGTTCTCAAAGAGCGCAACATACACA
TACTTGTCGTGGGAATGCCAAGCGGCGGGGAAGCAGAGCATAGTGATACGCAAAAGCGCATCTCTCATTTTATCTCCCTT
CTTAGTTTTGAGGGTGAGATTTGCTTTGTCAATGAGGACTATACAAGCTTTAATGCTTTGCAATCTCTCTCTTATATGAA
AAGGCAAAATCGTGCCAGAGCCCAAAAAGATGGGCGCATAGATTCTCTAAGTGCGTGTGAAATCTTGCAACGATATATAC
AATCGCAAAAATCCTAA

Upstream 100 bases:

>100_bases
GGTTTGTGCTTATACCTATCATTGAGGCTGTCTTTGCAGTGCTTAATATCCTTGCTGTTATTAAAGCATACAAAGCTGAT
ACTTCTAAAAAAAGCGAATA

Downstream 100 bases:

>100_bases
GCAAAATCCTTATAAATACGAGTATCTGTATTGATTTTATTTATTTTTTATTTTGTAAAAAGCGCATAAAACCTTTTATT
TAAGTAAATTTTAAGTGGGG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNHCILACDVGLKRIGLATLKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGMPSGGEAEHSDTQKRISHFISL
LSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQKDGRIDSLSACEILQRYIQSQKS

Sequences:

>Translated_138_residues
MNHCILACDVGLKRIGLATLKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGMPSGGEAEHSDTQKRISHFISL
LSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQKDGRIDSLSACEILQRYIQSQKS
>Mature_138_residues
MNHCILACDVGLKRIGLATLKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGMPSGGEAEHSDTQKRISHFISL
LSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQKDGRIDSLSACEILQRYIQSQKS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_HELHP (Q7VGU1)

Other databases:

- EMBL:   AE017125
- RefSeq:   NP_860760.1
- ProteinModelPortal:   Q7VGU1
- SMR:   Q7VGU1
- GeneID:   1492917
- GenomeReviews:   AE017125_GR
- KEGG:   hhe:HH1229
- NMPDR:   fig|235279.1.peg.1229
- HOGENOM:   HBG607919
- OMA:   ILACDVG
- ProtClustDB:   PRK00109
- BioCyc:   HHEP235279:HH_1229-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15623; Mature: 15623

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHCILACDVGLKRIGLATLKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGMP
CCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC
SGGEAEHSDTQKRISHFISLLSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQKDGRI
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DSLSACEILQRYIQSQKS
CCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNHCILACDVGLKRIGLATLKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGMP
CCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC
SGGEAEHSDTQKRISHFISLLSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQKDGRI
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DSLSACEILQRYIQSQKS
CCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954