Click here to switch to the map view.

The map label for this gene is 32266034

Identifier: 32266034

GI number: 32266034

Start: 517329

End: 518339

Strand: Direct

Name: 32266034

Synonym: HH0535

Alternate gene names: NA

Gene position: 517329-518339 (Clockwise)

Preceding gene: 32266033

Following gene: 32266035

Centisome position: 28.75

GC content: 32.74

Gene sequence:

>1011_bases
ATGTATAAATCTCAACTTGATACACTCTTAAAACAATCTGCTCCGCGCATAAGTTTTCTGTATGGTGATAGCTTTTTAGT
GGGCTATTATAGTAGAAAAATTGCTCATTGTTTAAAAAGCGAGGAAAAGACGACTTTTTACTTTGATGAATACAATGCAA
ATAACATCAATGCTTTGCTTTCACAAGGCTCACTTTTTGGCTCTAGCTCACTTGTAGTGCTAAAAATCAATCATAAACTA
AACAAGGCTGATATAGAGCTTTTTCTTACTTCACTTTCACATAATACACAAAATGCGCTTATTATAGAATACTATCAAGC
GTCAAATAAATCAGATGGGGATTATGTAAGAGATTGCAAAATTTGTGCTGGATATTTTAAAAATCCCAAAATACCTAAAG
ATAGCATTGTGGAAGTGCGATTCTTTCCGCCAAAAATAGATGAATGTATGGGCTTTATGCGTGAGAGAAGCAAAGAATTA
GGGCTTATTGCCGATGATAAGATTCTAGGCTATATTTTAGGATTACAAAATAATGATATTGCACTCTCTTTAAATGAATT
AGAAAAATTTGTTATTTTCACAGGTGCAGAAAGAAGACCCATAGAACCAAATGATGTGAATTTACTTTGTGATGGCATAG
CAAGTTTTAGTGTAGAAGAGCTATGCCATACTTTAATGGAAAAAAAGCCTATTATCAAAATGCTCAACACTATCTATGAA
GAGGGAATTAATGAAATAATGATGATTGGGGAGATTCAAAGATTTTTTTATCAACTCTTTTTGTTTTTTGCTTTTATTAA
AATCAAAGGACGACCCGATGCGAAAGAGATTCTAGGATTTAGTCCACCTGCTCATATTATTGAGCGTTTATCACGTTATT
GCATTCGTTTTAAAGAGACACAATATATTGCTATCTTTGAGTTACTCTCTGCTTGGCGCTATGAAGTAAGCAAAGGCAAA
TCCAAACAATCTATGAGCACTTTAATTAAAATTCAAGAAATGATAAGATAG

Upstream 100 bases:

>100_bases
GACGATTTTGTCATAATGTTTGAAATTGGCATTAAGGGTTTTAATAAATAAATCCTGCTAGAATCCTTAGGATTTACATC
TTAAGGATTCTCTGCAATAA

Downstream 100 bases:

>100_bases
AATCTTACCCTTACACCTTGCTCTTTTGTAACACAAAAGCTTTGTGGCTTCATAGCAATAAACAAAAGGGCGGTTACACC
AAAAGGAGATTACAATGAAA

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MYKSQLDTLLKQSAPRISFLYGDSFLVGYYSRKIAHCLKSEEKTTFYFDEYNANNINALLSQGSLFGSSSLVVLKINHKL
NKADIELFLTSLSHNTQNALIIEYYQASNKSDGDYVRDCKICAGYFKNPKIPKDSIVEVRFFPPKIDECMGFMRERSKEL
GLIADDKILGYILGLQNNDIALSLNELEKFVIFTGAERRPIEPNDVNLLCDGIASFSVEELCHTLMEKKPIIKMLNTIYE
EGINEIMMIGEIQRFFYQLFLFFAFIKIKGRPDAKEILGFSPPAHIIERLSRYCIRFKETQYIAIFELLSAWRYEVSKGK
SKQSMSTLIKIQEMIR

Sequences:

>Translated_336_residues
MYKSQLDTLLKQSAPRISFLYGDSFLVGYYSRKIAHCLKSEEKTTFYFDEYNANNINALLSQGSLFGSSSLVVLKINHKL
NKADIELFLTSLSHNTQNALIIEYYQASNKSDGDYVRDCKICAGYFKNPKIPKDSIVEVRFFPPKIDECMGFMRERSKEL
GLIADDKILGYILGLQNNDIALSLNELEKFVIFTGAERRPIEPNDVNLLCDGIASFSVEELCHTLMEKKPIIKMLNTIYE
EGINEIMMIGEIQRFFYQLFLFFAFIKIKGRPDAKEILGFSPPAHIIERLSRYCIRFKETQYIAIFELLSAWRYEVSKGK
SKQSMSTLIKIQEMIR
>Mature_336_residues
MYKSQLDTLLKQSAPRISFLYGDSFLVGYYSRKIAHCLKSEEKTTFYFDEYNANNINALLSQGSLFGSSSLVVLKINHKL
NKADIELFLTSLSHNTQNALIIEYYQASNKSDGDYVRDCKICAGYFKNPKIPKDSIVEVRFFPPKIDECMGFMRERSKEL
GLIADDKILGYILGLQNNDIALSLNELEKFVIFTGAERRPIEPNDVNLLCDGIASFSVEELCHTLMEKKPIIKMLNTIYE
EGINEIMMIGEIQRFFYQLFLFFAFIKIKGRPDAKEILGFSPPAHIIERLSRYCIRFKETQYIAIFELLSAWRYEVSKGK
SKQSMSTLIKIQEMIR

Specific function: Could be the functional equivalent of DNA polymerase III delta subunit (holA) [H]

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010372 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 38754; Mature: 38754

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKSQLDTLLKQSAPRISFLYGDSFLVGYYSRKIAHCLKSEEKTTFYFDEYNANNINALL
CCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
SQGSLFGSSSLVVLKINHKLNKADIELFLTSLSHNTQNALIIEYYQASNKSDGDYVRDCK
HCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHH
ICAGYFKNPKIPKDSIVEVRFFPPKIDECMGFMRERSKELGLIADDKILGYILGLQNNDI
HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCCCE
ALSLNELEKFVIFTGAERRPIEPNDVNLLCDGIASFSVEELCHTLMEKKPIIKMLNTIYE
EEEHHHHCEEEEEECCCCCCCCCCCCHHEEHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH
EGINEIMMIGEIQRFFYQLFLFFAFIKIKGRPDAKEILGFSPPAHIIERLSRYCIRFKET
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCC
QYIAIFELLSAWRYEVSKGKSKQSMSTLIKIQEMIR
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MYKSQLDTLLKQSAPRISFLYGDSFLVGYYSRKIAHCLKSEEKTTFYFDEYNANNINALL
CCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
SQGSLFGSSSLVVLKINHKLNKADIELFLTSLSHNTQNALIIEYYQASNKSDGDYVRDCK
HCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHH
ICAGYFKNPKIPKDSIVEVRFFPPKIDECMGFMRERSKELGLIADDKILGYILGLQNNDI
HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCCCE
ALSLNELEKFVIFTGAERRPIEPNDVNLLCDGIASFSVEELCHTLMEKKPIIKMLNTIYE
EEEHHHHCEEEEEECCCCCCCCCCCCHHEEHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH
EGINEIMMIGEIQRFFYQLFLFFAFIKIKGRPDAKEILGFSPPAHIIERLSRYCIRFKET
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCC
QYIAIFELLSAWRYEVSKGKSKQSMSTLIKIQEMIR
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]