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The map label for this gene is exbD [C]

Identifier: 32265931

GI number: 32265931

Start: 415254

End: 415649

Strand: Direct

Name: exbD [C]

Synonym: HH0432

Alternate gene names: 32265931

Gene position: 415254-415649 (Clockwise)

Preceding gene: 32265930

Following gene: 32265932

Centisome position: 23.08

GC content: 32.83

Gene sequence:

>396_bases
ATGGAAGAATTTGATTGGGAAGAAAAGCCTGAGCTTAATATCACCCCGCTTGTAGATATTATGCTTGTGCTTTTGGCAAT
CCTTATGGTGAGCACCCCTACAATTACTTATCAAGAAGATATTACTCTCCCTAAAGGCTCTAAGACAAAAAAAATTGCTC
GAGATACGATGCTTGAAATACGTGTAAGTGCTCATAGAAAAATCTATATACGCAATAAGGTATATGAGTTTAAAAATTTT
GCAGATAGTTTCGTGCTTTTTAGTAAAAACTTTGATAAAAACATACATATCTTTATCCGTGCGGATAAAAATCTTAAATA
CGAAGATATTATTTATATTCTTAAAGTCGCCAAAGAATCCGGTTTCCTTAAAGTATCTCTTGTTACTAGTAGCTAA

Upstream 100 bases:

>100_bases
GCCTATTCATTCCATTTACTTCTTAAACGCAAGTCATACCATATCATTACCTGCATTCAAATGCAAATTGATATTATGCT
TTCAAGTAAGTAGGATTCTA

Downstream 100 bases:

>100_bases
AATGAATAATGCTCTCTTATTTATCGCAAGTGGCATCATTTCACTCTGTATTTATTGTTTTATTATTATTGCTTTTGTAT
TTACTCTTTTTATTTCACCC

Product: biopolymer transport protein ExbD-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MEEFDWEEKPELNITPLVDIMLVLLAILMVSTPTITYQEDITLPKGSKTKKIARDTMLEIRVSAHRKIYIRNKVYEFKNF
ADSFVLFSKNFDKNIHIFIRADKNLKYEDIIYILKVAKESGFLKVSLVTSS

Sequences:

>Translated_131_residues
MEEFDWEEKPELNITPLVDIMLVLLAILMVSTPTITYQEDITLPKGSKTKKIARDTMLEIRVSAHRKIYIRNKVYEFKNF
ADSFVLFSKNFDKNIHIFIRADKNLKYEDIIYILKVAKESGFLKVSLVTSS
>Mature_131_residues
MEEFDWEEKPELNITPLVDIMLVLLAILMVSTPTITYQEDITLPKGSKTKKIARDTMLEIRVSAHRKIYIRNKVYEFKNF
ADSFVLFSKNFDKNIHIFIRADKNLKYEDIIYILKVAKESGFLKVSLVTSS

Specific function: Involved In The Tonb-Dependent Energy-Dependent Transport Of Various Receptor-Bound Substrates. [C]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=29.8387096774194, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15307; Mature: 15307

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEFDWEEKPELNITPLVDIMLVLLAILMVSTPTITYQEDITLPKGSKTKKIARDTMLEI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHEEE
RVSAHRKIYIRNKVYEFKNFADSFVLFSKNFDKNIHIFIRADKNLKYEDIIYILKVAKES
EECCCEEEEEECHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHEEEEECCCC
GFLKVSLVTSS
CEEEEEEEECC
>Mature Secondary Structure
MEEFDWEEKPELNITPLVDIMLVLLAILMVSTPTITYQEDITLPKGSKTKKIARDTMLEI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHEEE
RVSAHRKIYIRNKVYEFKNFADSFVLFSKNFDKNIHIFIRADKNLKYEDIIYILKVAKES
EECCCEEEEEECHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHEEEEECCCC
GFLKVSLVTSS
CEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]