Click here to switch to the map view.

The map label for this gene is 32265749

Identifier: 32265749

GI number: 32265749

Start: 241053

End: 242432

Strand: Direct

Name: 32265749

Synonym: HH0250

Alternate gene names: NA

Gene position: 241053-242432 (Clockwise)

Preceding gene: 32265748

Following gene: 32265750

Centisome position: 13.4

GC content: 35.22

Gene sequence:

>1380_bases
ATGAATAGTAAGCTTAAGGTCGCTTGGTATAATGGTATGCACATTGATAAAATCCATTTTGAGCAACAAGAACGATTTTT
AGAACATATTATCCATACAAAAACCTCTCGACTTGTATCTAATCTTTATGGTGTATTTGATGTAAGTTTTTCTACCGATA
TGCTCAATTTGGGCAAAATAGCCCTTACACAAATTAGTGGAATTACACAAGATGGTAGCGTGTTTAATGCGCCAGATGAT
GATTTATTACCTGAAGTTTTGGAGTTGCCGCCCAATATGTCTTCACCAATTATTACGCTAAAAATCCCTACATATTCAGA
CGCTACTGCTGATATGTCTTTAAAAAATACTTTTCCAAACTCCAAGTATATTGTAAGCAATGTACCTACAACTTCCAAGA
TTCACGATGATGTGCAAGATTACATACATACTAACACAGAAGAAATCTCTTATCAGCAAGAAAAAGTTTCTCTTGCATTG
GGGAGTTTGCGGCTAAAGCTTGGTATCCTTGGAGACAAATCACCAAATGAACTAGAAATACCCATAGCAAAAGTGAAAAA
CATCTATTCTCATAGCAAAAAAATAGAGCTTGATGAAAAATTTATCCCCACCTCTATTGATATTTGCAGTAATGCCTTTA
TAAAAAGTTTTCTAGAAGAAATGCTCTTTTCCATCAAGCAACACAAAGAAAGCTTCACGCAAATTTTTAGAGGCATAGAC
CAAACCAAAAATACGCTTGATTTTAGCACCTATTTATCGCTCAATCTCCTCAAAAAATACACGCTTATCTTTTCTTATCT
TGTCAATAAAGAAAAACTACACCCAGAGACATTATATGAAAAACTTGTAGAATTTCAAGCTGACTTACTTACCATAAGTC
ATAATGATGCACAAGATGAATTTATACCCTACGAGCACAATGATTTAAGTGCGGTTTTCATTCCGCTTAGTAATAATATC
CGCCTCCTCTTTGCTAATGTTACCTCACCCAAATATGCAATGGCACAAGTCATAGACAATGGCAATGGATTCTACGATTG
CATATTTGATAATGCTTCTATGCTGCAAGATGGGGAATTATTCTTAGCAGTAAGCTCCTCTCTACCTATGCAAACGTTAC
TTGAAACCTTTAGCACACAGAGTAAAATACATACCCAAGCCACTATTAAAAGCATTGTTGCCTCACAGCTTAAAGGACTG
CATATAGAGGCAATCCCCAGCATTCCATCAGCTCTACCGCATTTAAGTGGCTATGTATATTTTAAGCTTGATAAGCAAGA
TTTTATCTTTACGCATTTTGCTAAGCAAAATGTTATCAGCCTTTATATGACAAATAATATCACAAAGCCCGACATTAAGC
TTTGGGCATTATTTAACTAA

Upstream 100 bases:

>100_bases
ACTGAAGGCATTATGCAACACAAAAAAAGTAAGCAAAGTCAAGGTAAAGATACAAAGGCTGATGGCACTGCTGGAGAAAA
CAATATAAAGGATTTGTTCA

Downstream 100 bases:

>100_bases
AGAGAAATGCTATGAACACAGAGCAAGAACTTTCCCTGCTACTTGAAACAAATTTTGCAAACCATTGCAACAATATGCAA
AACAATAAGATTTTACACTT

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Conserved Protein; Protein ImpJ/VasE; Type VI Secretion System Core Protein; Replication/Virulence Associated Protein; T6ss M; Protein ImpJ; Type VI Secretion Protein VasE; Type VI Secretion System Protein ImpJ; Temperature-Dependent Protein Secretion ImpJ; Type VI Secretion

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MNSKLKVAWYNGMHIDKIHFEQQERFLEHIIHTKTSRLVSNLYGVFDVSFSTDMLNLGKIALTQISGITQDGSVFNAPDD
DLLPEVLELPPNMSSPIITLKIPTYSDATADMSLKNTFPNSKYIVSNVPTTSKIHDDVQDYIHTNTEEISYQQEKVSLAL
GSLRLKLGILGDKSPNELEIPIAKVKNIYSHSKKIELDEKFIPTSIDICSNAFIKSFLEEMLFSIKQHKESFTQIFRGID
QTKNTLDFSTYLSLNLLKKYTLIFSYLVNKEKLHPETLYEKLVEFQADLLTISHNDAQDEFIPYEHNDLSAVFIPLSNNI
RLLFANVTSPKYAMAQVIDNGNGFYDCIFDNASMLQDGELFLAVSSSLPMQTLLETFSTQSKIHTQATIKSIVASQLKGL
HIEAIPSIPSALPHLSGYVYFKLDKQDFIFTHFAKQNVISLYMTNNITKPDIKLWALFN

Sequences:

>Translated_459_residues
MNSKLKVAWYNGMHIDKIHFEQQERFLEHIIHTKTSRLVSNLYGVFDVSFSTDMLNLGKIALTQISGITQDGSVFNAPDD
DLLPEVLELPPNMSSPIITLKIPTYSDATADMSLKNTFPNSKYIVSNVPTTSKIHDDVQDYIHTNTEEISYQQEKVSLAL
GSLRLKLGILGDKSPNELEIPIAKVKNIYSHSKKIELDEKFIPTSIDICSNAFIKSFLEEMLFSIKQHKESFTQIFRGID
QTKNTLDFSTYLSLNLLKKYTLIFSYLVNKEKLHPETLYEKLVEFQADLLTISHNDAQDEFIPYEHNDLSAVFIPLSNNI
RLLFANVTSPKYAMAQVIDNGNGFYDCIFDNASMLQDGELFLAVSSSLPMQTLLETFSTQSKIHTQATIKSIVASQLKGL
HIEAIPSIPSALPHLSGYVYFKLDKQDFIFTHFAKQNVISLYMTNNITKPDIKLWALFN
>Mature_459_residues
MNSKLKVAWYNGMHIDKIHFEQQERFLEHIIHTKTSRLVSNLYGVFDVSFSTDMLNLGKIALTQISGITQDGSVFNAPDD
DLLPEVLELPPNMSSPIITLKIPTYSDATADMSLKNTFPNSKYIVSNVPTTSKIHDDVQDYIHTNTEEISYQQEKVSLAL
GSLRLKLGILGDKSPNELEIPIAKVKNIYSHSKKIELDEKFIPTSIDICSNAFIKSFLEEMLFSIKQHKESFTQIFRGID
QTKNTLDFSTYLSLNLLKKYTLIFSYLVNKEKLHPETLYEKLVEFQADLLTISHNDAQDEFIPYEHNDLSAVFIPLSNNI
RLLFANVTSPKYAMAQVIDNGNGFYDCIFDNASMLQDGELFLAVSSSLPMQTLLETFSTQSKIHTQATIKSIVASQLKGL
HIEAIPSIPSALPHLSGYVYFKLDKQDFIFTHFAKQNVISLYMTNNITKPDIKLWALFN

Specific function: Unknown

COG id: COG3522

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52075; Mature: 52075

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKLKVAWYNGMHIDKIHFEQQERFLEHIIHTKTSRLVSNLYGVFDVSFSTDMLNLGKI
CCCCEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHCCHH
ALTQISGITQDGSVFNAPDDDLLPEVLELPPNMSSPIITLKIPTYSDATADMSLKNTFPN
HHHHHCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEECCCCCC
SKYIVSNVPTTSKIHDDVQDYIHTNTEEISYQQEKVSLALGSLRLKLGILGDKSPNELEI
CCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEC
PIAKVKNIYSHSKKIELDEKFIPTSIDICSNAFIKSFLEEMLFSIKQHKESFTQIFRGID
CHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTKNTLDFSTYLSLNLLKKYTLIFSYLVNKEKLHPETLYEKLVEFQADLLTISHNDAQDE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHEEEEECCCCCCC
FIPYEHNDLSAVFIPLSNNIRLLFANVTSPKYAMAQVIDNGNGFYDCIFDNASMLQDGEL
CCCCCCCCCEEEEEEECCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCE
FLAVSSSLPMQTLLETFSTQSKIHTQATIKSIVASQLKGLHIEAIPSIPSALPHLSGYVY
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCEEE
FKLDKQDFIFTHFAKQNVISLYMTNNITKPDIKLWALFN
EEECCCCEEEEEHHCCCEEEEEEECCCCCCCEEEEEEEC
>Mature Secondary Structure
MNSKLKVAWYNGMHIDKIHFEQQERFLEHIIHTKTSRLVSNLYGVFDVSFSTDMLNLGKI
CCCCEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHCCHH
ALTQISGITQDGSVFNAPDDDLLPEVLELPPNMSSPIITLKIPTYSDATADMSLKNTFPN
HHHHHCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEECCCCCC
SKYIVSNVPTTSKIHDDVQDYIHTNTEEISYQQEKVSLALGSLRLKLGILGDKSPNELEI
CCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEC
PIAKVKNIYSHSKKIELDEKFIPTSIDICSNAFIKSFLEEMLFSIKQHKESFTQIFRGID
CHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTKNTLDFSTYLSLNLLKKYTLIFSYLVNKEKLHPETLYEKLVEFQADLLTISHNDAQDE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHEEEEECCCCCCC
FIPYEHNDLSAVFIPLSNNIRLLFANVTSPKYAMAQVIDNGNGFYDCIFDNASMLQDGEL
CCCCCCCCCEEEEEEECCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCE
FLAVSSSLPMQTLLETFSTQSKIHTQATIKSIVASQLKGLHIEAIPSIPSALPHLSGYVY
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCEEE
FKLDKQDFIFTHFAKQNVISLYMTNNITKPDIKLWALFN
EEECCCCEEEEEHHCCCEEEEEEECCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA