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The map label for this gene is yomI [H]

Identifier: 32265510

GI number: 32265510

Start: 9758

End: 10585

Strand: Direct

Name: yomI [H]

Synonym: HH0011

Alternate gene names: 32265510

Gene position: 9758-10585 (Clockwise)

Preceding gene: 32265502

Following gene: 32265512

Centisome position: 0.54

GC content: 35.51

Gene sequence:

>828_bases
ATGTTTTTTATGAGAATCTTTACGCCTATATTTATTTTGTTATGCTGCTGTTTTAATGCGCTCTACGCTCTTGAACCAAA
TACTGCCTATAATGGCACAACCTTTATTTATCATACCGATAAGCCTTTGTCTTTGAGTTATAATAAAAAAATGCTACATT
TTATGTCCCACCCCACCCAAAAAGATGTATTTATTGCCTTTATTCCTATTGGATATTATGATAAAAACGTAAAAACTCTT
AAAAATGGGAGTAAAACCGCACTTGAAATTACTATTTTACAAAAAACTTACAAAAAAGAACAAATTGTTGTCTCACAAGA
TAAGATTACTTATCCTGATAATATCGCAAAAAGGATTGAAAAAGAAAGAAACGATATGCTCAAAGTATATCGCACAATTA
CAAAGGGACGATTATGGGACAAGCCATTTATAAAGCCACTAGATTCGGTTATCACAAGCCCTTATGGCACTGCACGCGTT
TTTAATGGCACACTTAAAAGCTATCACGGAGGCACAGATTTTCGCGCAACCATAGGCACAAGCGTGAAAGCTAGTAACGA
TGGTAAAGTTGCCCTTGTCCAAGAGCGCTATCTTTCTGGAAAAACAATCGTTATTGACCACGGAGAAGGACTTTATAGTG
TATATTTTCATTTGAATGATTTTGAAGTGAAACAAGGAGATACTATCAAAAGGGGACAAATAATAGCCAAAAGTGGGGAT
ACGGGACGAGTGAGCGGTGCACACCTCCATTTTGGAATCATAATAAATGGCACAAATGTAGATGCAATGGACTTTATAGA
ACAAGTCAATACATTATTTGATACGTGA

Upstream 100 bases:

>100_bases
TTTTATCCTAAAATTGTTTAATCTAAGCTTTGAATTGCTATAATTTCAAAATCTACTTCGTTTCCTAAATGGAGGGGGAA
AACAATCTTAGGAGTCATCT

Downstream 100 bases:

>100_bases
AGTTTTAACCTCTCCATAAAGTTTTATAAAGGCATCCGTATCTTTAATATAAACTTCGCTCCGCTCATTTTTAGCAATCA
AGCCTTGTTGAAACATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MFFMRIFTPIFILLCCCFNALYALEPNTAYNGTTFIYHTDKPLSLSYNKKMLHFMSHPTQKDVFIAFIPIGYYDKNVKTL
KNGSKTALEITILQKTYKKEQIVVSQDKITYPDNIAKRIEKERNDMLKVYRTITKGRLWDKPFIKPLDSVITSPYGTARV
FNGTLKSYHGGTDFRATIGTSVKASNDGKVALVQERYLSGKTIVIDHGEGLYSVYFHLNDFEVKQGDTIKRGQIIAKSGD
TGRVSGAHLHFGIIINGTNVDAMDFIEQVNTLFDT

Sequences:

>Translated_275_residues
MFFMRIFTPIFILLCCCFNALYALEPNTAYNGTTFIYHTDKPLSLSYNKKMLHFMSHPTQKDVFIAFIPIGYYDKNVKTL
KNGSKTALEITILQKTYKKEQIVVSQDKITYPDNIAKRIEKERNDMLKVYRTITKGRLWDKPFIKPLDSVITSPYGTARV
FNGTLKSYHGGTDFRATIGTSVKASNDGKVALVQERYLSGKTIVIDHGEGLYSVYFHLNDFEVKQGDTIKRGQIIAKSGD
TGRVSGAHLHFGIIINGTNVDAMDFIEQVNTLFDT
>Mature_275_residues
MFFMRIFTPIFILLCCCFNALYALEPNTAYNGTTFIYHTDKPLSLSYNKKMLHFMSHPTQKDVFIAFIPIGYYDKNVKTL
KNGSKTALEITILQKTYKKEQIVVSQDKITYPDNIAKRIEKERNDMLKVYRTITKGRLWDKPFIKPLDSVITSPYGTARV
FNGTLKSYHGGTDFRATIGTSVKASNDGKVALVQERYLSGKTIVIDHGEGLYSVYFHLNDFEVKQGDTIKRGQIIAKSGD
TGRVSGAHLHFGIIINGTNVDAMDFIEQVNTLFDT

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=38.9473684210526, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 31169; Mature: 31169

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFMRIFTPIFILLCCCFNALYALEPNTAYNGTTFIYHTDKPLSLSYNKKMLHFMSHPTQ
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCEECCCHHHHHHHCCCCC
KDVFIAFIPIGYYDKNVKTLKNGSKTALEITILQKTYKKEQIVVSQDKITYPDNIAKRIE
CCEEEEEEEECEECCCHHHHCCCCCEEEEEEEEEHHCCCCEEEEECCCCCCCHHHHHHHH
KERNDMLKVYRTITKGRLWDKPFIKPLDSVITSPYGTARVFNGTLKSYHGGTDFRATIGT
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEECCHHHHCCCCCCEEEEECC
SVKASNDGKVALVQERYLSGKTIVIDHGEGLYSVYFHLNDFEVKQGDTIKRGQIIAKSGD
EEEECCCCCEEEEEEHHCCCCEEEEECCCCEEEEEEEECCEEECCCCCEECCEEEEECCC
TGRVSGAHLHFGIIINGTNVDAMDFIEQVNTLFDT
CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MFFMRIFTPIFILLCCCFNALYALEPNTAYNGTTFIYHTDKPLSLSYNKKMLHFMSHPTQ
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCEECCCHHHHHHHCCCCC
KDVFIAFIPIGYYDKNVKTLKNGSKTALEITILQKTYKKEQIVVSQDKITYPDNIAKRIE
CCEEEEEEEECEECCCHHHHCCCCCEEEEEEEEEHHCCCCEEEEECCCCCCCHHHHHHHH
KERNDMLKVYRTITKGRLWDKPFIKPLDSVITSPYGTARVFNGTLKSYHGGTDFRATIGT
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEECCHHHHCCCCCCEEEEECC
SVKASNDGKVALVQERYLSGKTIVIDHGEGLYSVYFHLNDFEVKQGDTIKRGQIIAKSGD
EEEECCCCCEEEEEEHHCCCCEEEEECCCCEEEEEEEECCEEECCCCCEECCEEEEECCC
TGRVSGAHLHFGIIINGTNVDAMDFIEQVNTLFDT
CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]