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The map label for this gene is radC [C]

Identifier: 30995411

GI number: 30995411

Start: 1011307

End: 1011972

Strand: Reverse

Name: radC [C]

Synonym: HI0952

Alternate gene names: 30995411

Gene position: 1011972-1011307 (Counterclockwise)

Preceding gene: 16272896

Following gene: 16272889

Centisome position: 55.29

GC content: 34.53

Gene sequence:

>666_bases
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTTGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCCCCT
TGCACGCTTTACTTTCTGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACAGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTTATGTATCAGCGGTCTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Upstream 100 bases:

>100_bases
CAACGCTATTTTTACGATATGCATCGCAGATTTTGAATCACTTGCTCGTCAAACCTAAAAAGTGCGGTCAAAATCTTTCT
TATTTTTCTTTTATAAATAT

Downstream 100 bases:

>100_bases
ATTTTTATAATATTGACCATTTTTTTACCGATTACATTCAGGAAAATCGCATTTACACTTGAGAAATGAAAACAAAGTCA
GTATAATTTGCGACCTTTAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGPLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTIYVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Sequences:

>Translated_221_residues
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGPLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTIYVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL
>Mature_221_residues
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGPLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTIYVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=222, Percent_Identity=49.5495495495495, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1788997, Length=104, Percent_Identity=57.6923076923077, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1788312, Length=113, Percent_Identity=54.8672566371681, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI2367100, Length=104, Percent_Identity=57.6923076923077, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25029; Mature: 25029

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGPLHALLSA
CCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
DKKAFCSVKGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEERE
CHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCE
VFMVLFLDNQHRLIKKERLFLGTIYVSAVYPREIIKEALYCNAAALILAHNHPSGITEPS
EEEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEEEEECCCCCCCCCC
YSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGPLHALLSA
CCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
DKKAFCSVKGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEERE
CHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCCE
VFMVLFLDNQHRLIKKERLFLGTIYVSAVYPREIIKEALYCNAAALILAHNHPSGITEPS
EEEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEEEEECCCCCCCCCC
YSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA