| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is capA [H]
Identifier: 308535245
GI number: 308535245
Start: 1739277
End: 1740221
Strand: Direct
Name: capA [H]
Synonym: NA
Alternate gene names: 308535245
Gene position: 1739277-1740221 (Clockwise)
Preceding gene: 197117889
Following gene: 197117891
Centisome position: 37.69
GC content: 67.72
Gene sequence:
>945_bases ATGATGGGGAGCGACTTCCCCGCAGCCAGACTCCCCAAGGACGGCGGGCGCTCGCTCTTCGCCGCCGCCGCACCCCTTTT CAAGCGCGCCGACATCGCCATGGCCAACCTGGAAGGCCCTCTCTGCGAGGGGGGAAACCCAGTCAAAGAGCCCCTTCCCG GCAGGCGCTACCTGTTCCGCACCCCCCCCGCCTTCGCCAGGATCTTAAGCGATGCCGGGATCTCCATGGTGTCGCTTGCC AACAACCACGCCCAGGACTTCGGCAGAGAAGGGGTCGCCTCCACCAAGCAGGCACTGGCCCGGGCCGGGGTACTCTACTC CAGCAAGAAGGGGGAGGTCGCCGAGTTCACTGTGCGCGGCACCCGGGTCGGCATCATCTCGCTCGCCTTCGGCCCACCGC CTCGCTCCATCACCTTTCCGGCACAGGCCCTGCAGGAGATCGCCCGGGAAGCGGCGAACTACGACATCCTGATCCTCTCG ATCCATGCCGGAGCGGAGGGGCGCGACGCGCAGCATGTGACCCCGGGGATGGAGCGCTACCTGGATGAGCCGCGCGGCGA CCTTCTCTCCTTCGCGCACCAGGCGGTGGCGGCGGGGGCGGACCTGGTGGTGGCCCACGGCCCACACGTGCCGCGGGCCC TGGAGCTTTACCGCGGCCGGCTGATCGCCTACAGCCTCGGGAACTTCGCCACCTTCGGCGGGGTGAGCGTCGCCGGCGAG AGCGGCTACGCTCCGCTGCTCACGGTCCGCCTCGACAAAGACGGCTCCTTCCTGGAGGGGAGCATCAACTCCTTCCGGCA GGCGTGTCTTACGGCACCCGCTCCCGATCCCAAGCAGCGCGCGCTTTCCCTGATGCGGAGGCTCTCCGCCGAGGACTTCC CCGACTCACCCTTAAGCTTTGGCAGCCTGGGGGAACTCAAAACCTCTAACAGGGAGAACTTCTGA
Upstream 100 bases:
NA
Downstream 100 bases:
NA
Product: poly-gamma-glutamate capsule biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
NA
Sequences:
>Translated_314_residues MMGSDFPAARLPKDGGRSLFAAAAPLFKRADIAMANLEGPLCEGGNPVKEPLPGRRYLFRTPPAFARILSDAGISMVSLA NNHAQDFGREGVASTKQALARAGVLYSSKKGEVAEFTVRGTRVGIISLAFGPPPRSITFPAQALQEIAREAANYDILILS IHAGAEGRDAQHVTPGMERYLDEPRGDLLSFAHQAVAAGADLVVAHGPHVPRALELYRGRLIAYSLGNFATFGGVSVAGE SGYAPLLTVRLDKDGSFLEGSINSFRQACLTAPAPDPKQRALSLMRRLSAEDFPDSPLSFGSLGELKTSNRENF >Mature_314_residues MMGSDFPAARLPKDGGRSLFAAAAPLFKRADIAMANLEGPLCEGGNPVKEPLPGRRYLFRTPPAFARILSDAGISMVSLA NNHAQDFGREGVASTKQALARAGVLYSSKKGEVAEFTVRGTRVGIISLAFGPPPRSITFPAQALQEIAREAANYDILILS IHAGAEGRDAQHVTPGMERYLDEPRGDLLSFAHQAVAAGADLVVAHGPHVPRALELYRGRLIAYSLGNFATFGGVSVAGE SGYAPLLTVRLDKDGSFLEGSINSFRQACLTAPAPDPKQRALSLMRRLSAEDFPDSPLSFGSLGELKTSNRENF
Specific function: Seems to be required for maximum PGA (gamma-polyglutamic acid) production [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CapA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019079 [H]
Pfam domain/function: PF09587 PGA_cap [H]
EC number: NA
Molecular weight: Translated: 33433; Mature: 33433
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMGSDFPAARLPKDGGRSLFAAAAPLFKRADIAMANLEGPLCEGGNPVKEPLPGRRYLFR CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCEEEE TPPAFARILSDAGISMVSLANNHAQDFGREGVASTKQALARAGVLYSSKKGEVAEFTVRG CCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC TRVGIISLAFGPPPRSITFPAQALQEIAREAANYDILILSIHAGAEGRDAQHVTPGMERY CEEEEEEEEECCCCCCEECHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHH LDEPRGDLLSFAHQAVAAGADLVVAHGPHVPRALELYRGRLIAYSLGNFATFGGVSVAGE HCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCEEEEEECCCCCCCCCEEECCC SGYAPLLTVRLDKDGSFLEGSINSFRQACLTAPAPDPKQRALSLMRRLSAEDFPDSPLSF CCCCEEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC GSLGELKTSNRENF CCCCCCCCCCCCCC >Mature Secondary Structure MMGSDFPAARLPKDGGRSLFAAAAPLFKRADIAMANLEGPLCEGGNPVKEPLPGRRYLFR CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCEEEE TPPAFARILSDAGISMVSLANNHAQDFGREGVASTKQALARAGVLYSSKKGEVAEFTVRG CCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC TRVGIISLAFGPPPRSITFPAQALQEIAREAANYDILILSIHAGAEGRDAQHVTPGMERY CEEEEEEEEECCCCCCEECHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHH LDEPRGDLLSFAHQAVAAGADLVVAHGPHVPRALELYRGRLIAYSLGNFATFGGVSVAGE HCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCEEEEEECCCCCCCCCEEECCC SGYAPLLTVRLDKDGSFLEGSINSFRQACLTAPAPDPKQRALSLMRRLSAEDFPDSPLSF CCCCEEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC GSLGELKTSNRENF CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353933; 10486244; 11751809; 9384377 [H]