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The map label for this gene is yrrC [H]

Identifier: 30264464

GI number: 30264464

Start: 4197979

End: 4200291

Strand: Reverse

Name: yrrC [H]

Synonym: BA_4622

Alternate gene names: 30264464

Gene position: 4200291-4197979 (Counterclockwise)

Preceding gene: 30264465

Following gene: 30264463

Centisome position: 80.35

GC content: 38.22

Gene sequence:

>2313_bases
TTGTTTGAGGAAGAAAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCACAACGAAGAAAACCTCTATTCCGT
TGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGATAAACGGTCATTTTCCCCGCATGC
ATGAAGATGAAGTGTTTACGTTGACAGGACATTTTAAAGACCATCCGAAGTATGGGAAACAATATTTAGTTGAAACGTTT
AAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGCGCAATATTTAGCGAGTGATCTATTTAAAGGGATAGGAAAACGCAC
AGCTGAAAAAATTGTGGCCCATCTAGGGGAACATGCTATTTCTAAAATCATGGATGATCCTGAGGCTTTAAACGGTGTTG
TTAACAAACAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTAGAGAAAGTAATGAGTTTTTTAAAT
GGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAATATAAAGAGATGACATTAGAAGTAATTCGTAATAA
CCCATATCAGCTTATTGAAGAAGTGGATGGGATTGGATTTGGAAGAGCGGATGATATCGGACGTGCGTTAGGGATATCGG
GTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTGTCATTACAACTTGGTCACGTTTATATG
AGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAGAGTGACAGAGGAAGACATTATAAG
CTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATCGAAGAAGAGCGAGTATATTTGGCATCGTTATTCTATTCTG
AAAAAGGTGTTGTGAAGTCTATTCGCAGGCTCATGAATCAGGAAGAAACACCTTCATTTCCTGAAGCAGAAGTGTTAAAG
ACGTTAGGTGAAATTGAAGAACAATTGAACGTACAGTATGCGCCGCTTCAGCAAGAAGCAATTCAAACGGCACTTCATAA
ACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAGGAATTGTTGAAATGTATGCGTCAC
TTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATACTATTAACAGCTCCAACAGGAAGA
GCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGCACAATTCACCGTTTACTTGGATGGACGCCAGAAGGGTC
TTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAATTTTCAATGGTTGATATTTGGCTTG
CAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGATGAAGATCAATTACCATCTGTAGGA
CCTGGGCAAGTATTGAAAGATTTATTAAATGCAGGTGCAGTTCCAACAGTAAAGCTTACTGAAATTTATCGTCAAGCGGA
AGGTTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAGATTTAGCGCAAAATCAAAAAGATC
GTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAAGTTGTTAAGAAGGTTTGCGAAAACGCTAAGACAAAAGGGTTT
AGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAATGTACTAAATGAAGCGTTGCAAGA
AGTGTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTATACCGAAGAGGCGATAAAGTTTTGC
AACTCGTTAATCAGCCAGAGAGCCAAGTATTTAATGGTGATATCGGCGAAATTGTTTCGGTGTTTTATGCGAAAGAAAAC
GTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATACAAAACCAGATTTAAATCAAATTAC
ACATGCTTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCCATTGTGATTATGCCGATAGTGAAAAGTTATA
ATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTCCTTATTATTTGCGGGGAGGAAGCT
GCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGCTAGCCGCTTGCAAGAATCACAAGG
AGAAGTACAGATGGTAACGGTTAATGGCGAAGAGATGGACGTGGAAAACATTTCACCGTATGATTTCATGTAA

Upstream 100 bases:

>100_bases
GTAGTTATCCCTCATCTAAAGAGGTGGGGGATGTACTGCTCATTAAAGTGAAACGAAACCGGAAAGGAGAGGAAAGATGG
GAAATCAACATGCAATGGAT

Downstream 100 bases:

>100_bases
CAAGGTGAAATTATATAGTGAAACTTTCAAACGTATAACGTTGAAAGGCTCCAGCAATGTATAAATGAATGCAGTTTGGA
CATAATGGCGAATAGAATTC

Product: helicase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 770; Mature: 770

Protein sequence:

>770_residues
MFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYGKQYLVETF
KKELPQTKAGMAQYLASDLFKGIGKRTAEKIVAHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGLEKVMSFLN
GYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVSLQLGHVYM
RKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPSFPEAEVLK
TLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPILLTAPTGR
AAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGDEDQLPSVG
PGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVCENAKTKGF
SARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVSVFYAKEN
VEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKFLIICGEEA
AFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Sequences:

>Translated_770_residues
MFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYGKQYLVETF
KKELPQTKAGMAQYLASDLFKGIGKRTAEKIVAHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGLEKVMSFLN
GYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVSLQLGHVYM
RKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPSFPEAEVLK
TLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPILLTAPTGR
AAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGDEDQLPSVG
PGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVCENAKTKGF
SARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVSVFYAKEN
VEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKFLIICGEEA
AFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM
>Mature_770_residues
MFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYGKQYLVETF
KKELPQTKAGMAQYLASDLFKGIGKRTAEKIVAHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGLEKVMSFLN
GYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVSLQLGHVYM
RKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPSFPEAEVLK
TLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPILLTAPTGR
AAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGDEDQLPSVG
PGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVCENAKTKGF
SARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVSVFYAKEN
VEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKFLIICGEEA
AFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=529, Percent_Identity=25.1417769376182, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 86492; Mature: 86492

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFT
CCCHHHHHHHHHHHHHHHCCCCHHEEHHEEEEEECCCCCCCCEEEEECCCCCCCCCCEEE
LTGHFKDHPKYGKQYLVETFKKELPQTKAGMAQYLASDLFKGIGKRTAEKIVAHLGEHAI
EECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKIMDDPEALNGVVNKQKAQEIYETIVEHQGLEKVMSFLNGYGFGTKLSIKIYQQYKEMT
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHH
LEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVSLQLGHVYM
HHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHCEEEEEECCEEEEHHHHH
RKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKS
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCHHHHH
IRRLMNQEETPSFPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGK
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHCCCEEEEECCCCCCH
TTVIKGIVEMYASLHGLSLNPNEYSDDNPFPILLTAPTGRAAKRMSESTGLPACTIHRLL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHH
GWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGDEDQLPSVG
CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
PGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCT
HHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCEECCC
GAQIVEVVKKVCENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIA
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHCCCCC
YGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVSVFYAKENVEQQDMIIVSFDGIEVTYTK
HHHHHHHCCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEC
PDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKFLIICGEEA
CCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHH
AFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCC
>Mature Secondary Structure
MFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFT
CCCHHHHHHHHHHHHHHHCCCCHHEEHHEEEEEECCCCCCCCEEEEECCCCCCCCCCEEE
LTGHFKDHPKYGKQYLVETFKKELPQTKAGMAQYLASDLFKGIGKRTAEKIVAHLGEHAI
EECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKIMDDPEALNGVVNKQKAQEIYETIVEHQGLEKVMSFLNGYGFGTKLSIKIYQQYKEMT
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHH
LEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVSLQLGHVYM
HHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHCEEEEEECCEEEEHHHHH
RKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKS
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCHHHHH
IRRLMNQEETPSFPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGK
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHCCCEEEEECCCCCCH
TTVIKGIVEMYASLHGLSLNPNEYSDDNPFPILLTAPTGRAAKRMSESTGLPACTIHRLL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHH
GWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGDEDQLPSVG
CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
PGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCT
HHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCEECCC
GAQIVEVVKKVCENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIA
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHCCCCC
YGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVSVFYAKENVEQQDMIIVSFDGIEVTYTK
HHHHHHHCCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEC
PDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKFLIICGEEA
CCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHH
AFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]