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The map label for this gene is sucC

Identifier: 30263839

GI number: 30263839

Start: 3652405

End: 3653565

Strand: Reverse

Name: sucC

Synonym: BA_3974

Alternate gene names: 30263839

Gene position: 3653565-3652405 (Counterclockwise)

Preceding gene: 30263840

Following gene: 30263838

Centisome position: 69.89

GC content: 37.73

Gene sequence:

>1161_bases
ATGAATATCCATGAGTACCAAGGTAAGGCAGTCCTTAGAAGTTATGGGGTTAGCGTTCCGAACGGGAAGGTTGCATTTAC
AGTAGAAGAAGCTGTAGAAGCAGCGAAAGAATTAGGAACGGATGTATGTGTAGTAAAAGCACAAATTCACGCTGGTGGAC
GCGGCAAAGCTGGCGGAGTAAAAGTTGCAAAAAATTTAGATGAAGTTCGTACATATGCAGAGAGCATTTTAGGAACTACA
CTTGTGACACATCAAACAGGTCCTGAAGGTAAGGAAGTAAAACGCTTACTTATCGAAGAAGGTTGCGATATTAAAAAAGA
ATATTATGTAGGTCTTGTTTTAGATCGTGCAACTTCTCAAGTTGTTTTAATGGCGTCTGAAGAAGGCGGAACAGAAATTG
AAGAAGTAGCAGAAAAAACACCAGAAAAAATCTTTAAAGAATATATTGATCCAGCAGTAGGTTTACAAGGCTTCCAAGCA
CGCCGGATTGCATTTAACATCAATATTCCAAAAGAGCTTGTAGGACAAGCTGTGAAGTTTATGATGGGCTTATACCGTGC
GTTTATCGAAAAAGATTGTTCTATCGCAGAGATTAATCCACTTGTTACAACAGGTGACGGTAAAGTTATGGCATTAGATG
CGAAATTAAACTTTGATTCTAACGCTTTATATCGCCATAAAGACATTTTAGAACTTCGTGATCTTGATGAAGAAGATGCA
AAAGAAATCGAAGCTTCTAAATATGACTTAAACTACATTCCTTTAGATGGAAATATCGGTTGTATGGTTAATGGTGCAGG
TTTAGCGATGGCTACGATGGATATCATTAAACATTACCATGGCGATCCAGCTAACTTCTTAGATGTTGGTGGCGGTGCGA
CAGCTGAAAAAGTTACAGAAGCATTTAAAATTATCCTTTCTGACAAAAATGTAAAAGGTATCTTCGTTAACATTTTTGGT
GGCATTATGAAGTGTGATGTTATTGCAGAAGGTGTTATTGAAGCAACGAAACAAGTAGGTCTTGAATTGCCTTTAGTTGT
ACGTCTTGAAGGTACAAACGTTGAGTTAGGTAAGAAAATTTTAAATGAGTCTGGCTTAAATATTGTTGCAGCAGAATCTA
TGACAGACGGTGCACAAAAAATTGTTTCACTAGTGGGCTAA

Upstream 100 bases:

>100_bases
GTAGACAGCGTGCCAATCATCTTATACAATGGCAATGTAATGTTTTTTAAACATTAAAAAACTTTTCGAGTAAAACAGGA
AAACAGGGGAGGATGGGACC

Downstream 100 bases:

>100_bases
TAGAAAGCGGGGGAGAAAAAATGAGCGTATTAGTTAATAAAGATACAAAAGTTATTGTTCAAGGTATTACAGGTTCTCAA
GGATTATTCCACACAAAACA

Product: succinyl-CoA synthetase subunit beta

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit beta; SCS-beta

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MNIHEYQGKAVLRSYGVSVPNGKVAFTVEEAVEAAKELGTDVCVVKAQIHAGGRGKAGGVKVAKNLDEVRTYAESILGTT
LVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQA
RRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRHKDILELRDLDEEDA
KEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFG
GIMKCDVIAEGVIEATKQVGLELPLVVRLEGTNVELGKKILNESGLNIVAAESMTDGAQKIVSLVG

Sequences:

>Translated_386_residues
MNIHEYQGKAVLRSYGVSVPNGKVAFTVEEAVEAAKELGTDVCVVKAQIHAGGRGKAGGVKVAKNLDEVRTYAESILGTT
LVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQA
RRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRHKDILELRDLDEEDA
KEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFG
GIMKCDVIAEGVIEATKQVGLELPLVVRLEGTNVELGKKILNESGLNIVAAESMTDGAQKIVSLVG
>Mature_386_residues
MNIHEYQGKAVLRSYGVSVPNGKVAFTVEEAVEAAKELGTDVCVVKAQIHAGGRGKAGGVKVAKNLDEVRTYAESILGTT
LVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQA
RRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRHKDILELRDLDEEDA
KEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFG
GIMKCDVIAEGVIEATKQVGLELPLVVRLEGTNVELGKKILNESGLNIVAAESMTDGAQKIVSLVG

Specific function: Tricarboxylic acid cycle. [C]

COG id: COG0045

COG function: function code C; Succinyl-CoA synthetase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ATP-grasp domain

Homologues:

Organism=Homo sapiens, GI11321583, Length=391, Percent_Identity=47.0588235294118, Blast_Score=360, Evalue=2e-99,
Organism=Homo sapiens, GI157779135, Length=383, Percent_Identity=46.9973890339426, Blast_Score=332, Evalue=3e-91,
Organism=Homo sapiens, GI294862256, Length=362, Percent_Identity=46.6850828729282, Blast_Score=312, Evalue=3e-85,
Organism=Escherichia coli, GI1786948, Length=385, Percent_Identity=54.8051948051948, Blast_Score=419, Evalue=1e-118,
Organism=Caenorhabditis elegans, GI17539378, Length=392, Percent_Identity=46.9387755102041, Blast_Score=350, Evalue=6e-97,
Organism=Caenorhabditis elegans, GI17567829, Length=390, Percent_Identity=45.6410256410256, Blast_Score=329, Evalue=1e-90,
Organism=Saccharomyces cerevisiae, GI6321683, Length=395, Percent_Identity=45.3164556962025, Blast_Score=348, Evalue=6e-97,
Organism=Drosophila melanogaster, GI161078106, Length=391, Percent_Identity=46.5473145780051, Blast_Score=337, Evalue=1e-92,
Organism=Drosophila melanogaster, GI24645208, Length=391, Percent_Identity=46.5473145780051, Blast_Score=337, Evalue=1e-92,
Organism=Drosophila melanogaster, GI281361397, Length=392, Percent_Identity=46.6836734693878, Blast_Score=335, Evalue=3e-92,
Organism=Drosophila melanogaster, GI281361395, Length=392, Percent_Identity=46.6836734693878, Blast_Score=335, Evalue=3e-92,
Organism=Drosophila melanogaster, GI21356231, Length=391, Percent_Identity=44.5012787723785, Blast_Score=313, Evalue=1e-85,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2361 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SUCC_BACAA (C3P5N7)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868073.1
- ProteinModelPortal:   C3P5N7
- SMR:   C3P5N7
- EnsemblBacteria:   EBBACT00000125687
- GeneID:   7848375
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_3997
- GeneTree:   EBGT00050000001392
- ProtClustDB:   PRK00696
- HAMAP:   MF_00558
- InterPro:   IPR011761
- InterPro:   IPR013650
- InterPro:   IPR013815
- InterPro:   IPR013816
- InterPro:   IPR005811
- InterPro:   IPR005809
- InterPro:   IPR016102
- Gene3D:   G3DSA:3.30.1490.20
- Gene3D:   G3DSA:3.30.470.20
- Gene3D:   G3DSA:3.40.50.261
- PANTHER:   PTHR11815
- TIGRFAMs:   TIGR01016

Pfam domain/function: PF08442 ATP-grasp_2; PF00549 Ligase_CoA; SSF52210 CoA_ligase

EC number: =6.2.1.5

Molecular weight: Translated: 41665; Mature: 41665

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50975 ATP_GRASP; PS01217 SUCCINYL_COA_LIG_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHEYQGKAVLRSYGVSVPNGKVAFTVEEAVEAAKELGTDVCVVKAQIHAGGRGKAGGV
CCCCHHCCHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCH
KVAKNLDEVRTYAESILGTTLVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQ
HHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCHHEEEEEEEECCCCE
VVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKF
EEEEECCCCCCHHHHHHHHCHHHHHHHHCCHHCCCCCCEEEEEEEECCCCHHHHHHHHHH
MMGLYRAFIEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRHKDILELRDLDEEDA
HHHHHHHHHHCCCCEEECCCEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHH
KEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTE
HHHHHCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHH
AFKIILSDKNVKGIFVNIFGGIMKCDVIAEGVIEATKQVGLELPLVVRLEGTNVELGKKI
HHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
LNESGLNIVAAESMTDGAQKIVSLVG
HCCCCCEEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MNIHEYQGKAVLRSYGVSVPNGKVAFTVEEAVEAAKELGTDVCVVKAQIHAGGRGKAGGV
CCCCHHCCHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCH
KVAKNLDEVRTYAESILGTTLVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQ
HHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCHHEEEEEEEECCCCE
VVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKF
EEEEECCCCCCHHHHHHHHCHHHHHHHHCCHHCCCCCCEEEEEEEECCCCHHHHHHHHHH
MMGLYRAFIEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRHKDILELRDLDEEDA
HHHHHHHHHHCCCCEEECCCEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHH
KEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTE
HHHHHCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHH
AFKIILSDKNVKGIFVNIFGGIMKCDVIAEGVIEATKQVGLELPLVVRLEGTNVELGKKI
HHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
LNESGLNIVAAESMTDGAQKIVSLVG
HCCCCCEEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA