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The map label for this gene is ymfN [H]

Identifier: 30263666

GI number: 30263666

Start: 3478364

End: 3480052

Strand: Reverse

Name: ymfN [H]

Synonym: BA_3787

Alternate gene names: 30263666

Gene position: 3480052-3478364 (Counterclockwise)

Preceding gene: 30263667

Following gene: 30263665

Centisome position: 66.57

GC content: 34.81

Gene sequence:

>1689_bases
ATGAGGATACAATATCTTTTGTCTTATAACCCAATCATTGAATATTACAGCCTTATTGAATCGGGAAAAGAAATTGTTAG
TGAAAAAGTTCGTAGAATATATAAGAAATTAGTAAGTGATATTGATGATAAAGAAAGTATATATGAATACGACTCAAAGA
AAGCAAACCATGCCATTGAGTTCATCGAAAACTTTTGTAAGCACTCAAAGGGAAAATGGGGCGGAAAACCAATTGTTTTA
GAAGTATGGCAAAAGGCATTTATTGCAGCAGCATTTGGATTTGTACATGGAATAGATGGCACAAGAAAATACAGAGAAGT
ATTACTTGTAGTTGCTCGTAAAAATGGAAAATCTACTGTTGGCTCAGGTATTGGATTGTATTTGCAAATAGCAGATGGGG
AACCAGGTTCAGAAGTTTATGCGGTAGCAACTAAGAAAGACCAAGCGAAATTAGTTTGGTTAGAATCAAAGCGAATGGTA
AAGAAGTCACCAGCACTATTAAAGCGTATTAAACCTTTAGTATCTGAAATGGTTTCTGAATGGAATGATAGTACATTTAA
ACCACTTGGCTCTGATAGTGAAACTTTAGATGGACTTAACGTACATGGTGCTATGATGGATGAAATCCATGCTTGGAAAG
ATAAAAACTTATATGACGTTATTGTAGATGGTACTTCTTCACGAGAACAGCCAATGATATTTATGATTACAACAGCCGGA
ACTGTCCGAGAGTCAGTGTATGATATGAAATATGAAGAAGCAGAAATGTTGTTAAATGGACTCGATGATCCGGATGGATA
TAAGGATGATCGTTTTTTACCTATAATCTATGAGTTGGATAAACGAGAGGAATGGACTGACCCATCAAAGTGGAAGAAAG
CAAATCCTGGGCTTGGATCGATAAAAAAGATAGACCAACTTGAAACAAAAGTAAACAAGGCAAAAGCAAATTCTTTGTTG
GTAAAAAACTTACTAACGAAAGATTTTAATATAAGAGAAACTTCAACAGAAGCATGGCTGACTTTTGAACAACTAAATAA
TCCTGAAACTTTTGATATAGAAAAGCTAAAGCCTTCCTATGGAATTGGTGGTTGCGATTTATCTTCAACTACCGATTTAA
CAGCAGCGAAGGTTATTTTTATGGTTCCAGAGGACCCACATATTTATGTGAAGCAGATGTATTGGCTTCCAGAAGATTTA
TTGGAGCAGCGAAGTAAAGAAGATAAAATTCCATATAATTTATGGCACGAGCAAGGAATATTAAGAACAACACCGGGAAA
TTCCGTTCATTATAAATTTGTTACGAAATGGTTTTTAGAAATACGAGATGAATATGGCATTTATCTACCTTGGATTGGTT
ATGATAAGTGGTCAGCTAAGTACTGGGTTGAGGAAATGGAAGGTTATTTTGGTAAAGAATCTATGATTCCTATCGCACAA
GGTAAACAAACTCTTTCTAGCCCGATGAAACTTTTAGGAGCTGATTTGGAATCTAAGTTAATAAACTATAATAACCACAC
AATTGACAAGTGGTGTCTTTCCAACACAGCCATAGACGTTGATAAAAATTTAAATATACAACCAAATAAAACAAAGAACC
AACGACGTCGTATTGATGGTACAGCAGCGCTTTTAAATGCATATGTAGTTCTTCAAGAAAAACGAAATGACTACCTCAAC
ATGATTTAA

Upstream 100 bases:

>100_bases
GTTATCAAACGATAATGAAGCAGTTGGGTGATTACATACCTAAAAAAACAGTTGAAAGTAAGGAGAAGGATGATGGGTTT
GATGACTTTGTGATGAATAA

Downstream 100 bases:

>100_bases
GAAGGAGGTGAGAATTTGGGGTTATTTGATAAGATCTTTGGTAAGAAACAGGCTCCTACTACAACTCGTTTTGAAATGAT
AAACGATAATGGTGGAGGTT

Product: prophage LambdaBa01, terminase, large subunit, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 562; Mature: 562

Protein sequence:

>562_residues
MRIQYLLSYNPIIEYYSLIESGKEIVSEKVRRIYKKLVSDIDDKESIYEYDSKKANHAIEFIENFCKHSKGKWGGKPIVL
EVWQKAFIAAAFGFVHGIDGTRKYREVLLVVARKNGKSTVGSGIGLYLQIADGEPGSEVYAVATKKDQAKLVWLESKRMV
KKSPALLKRIKPLVSEMVSEWNDSTFKPLGSDSETLDGLNVHGAMMDEIHAWKDKNLYDVIVDGTSSREQPMIFMITTAG
TVRESVYDMKYEEAEMLLNGLDDPDGYKDDRFLPIIYELDKREEWTDPSKWKKANPGLGSIKKIDQLETKVNKAKANSLL
VKNLLTKDFNIRETSTEAWLTFEQLNNPETFDIEKLKPSYGIGGCDLSSTTDLTAAKVIFMVPEDPHIYVKQMYWLPEDL
LEQRSKEDKIPYNLWHEQGILRTTPGNSVHYKFVTKWFLEIRDEYGIYLPWIGYDKWSAKYWVEEMEGYFGKESMIPIAQ
GKQTLSSPMKLLGADLESKLINYNNHTIDKWCLSNTAIDVDKNLNIQPNKTKNQRRRIDGTAALLNAYVVLQEKRNDYLN
MI

Sequences:

>Translated_562_residues
MRIQYLLSYNPIIEYYSLIESGKEIVSEKVRRIYKKLVSDIDDKESIYEYDSKKANHAIEFIENFCKHSKGKWGGKPIVL
EVWQKAFIAAAFGFVHGIDGTRKYREVLLVVARKNGKSTVGSGIGLYLQIADGEPGSEVYAVATKKDQAKLVWLESKRMV
KKSPALLKRIKPLVSEMVSEWNDSTFKPLGSDSETLDGLNVHGAMMDEIHAWKDKNLYDVIVDGTSSREQPMIFMITTAG
TVRESVYDMKYEEAEMLLNGLDDPDGYKDDRFLPIIYELDKREEWTDPSKWKKANPGLGSIKKIDQLETKVNKAKANSLL
VKNLLTKDFNIRETSTEAWLTFEQLNNPETFDIEKLKPSYGIGGCDLSSTTDLTAAKVIFMVPEDPHIYVKQMYWLPEDL
LEQRSKEDKIPYNLWHEQGILRTTPGNSVHYKFVTKWFLEIRDEYGIYLPWIGYDKWSAKYWVEEMEGYFGKESMIPIAQ
GKQTLSSPMKLLGADLESKLINYNNHTIDKWCLSNTAIDVDKNLNIQPNKTKNQRRRIDGTAALLNAYVVLQEKRNDYLN
MI
>Mature_562_residues
MRIQYLLSYNPIIEYYSLIESGKEIVSEKVRRIYKKLVSDIDDKESIYEYDSKKANHAIEFIENFCKHSKGKWGGKPIVL
EVWQKAFIAAAFGFVHGIDGTRKYREVLLVVARKNGKSTVGSGIGLYLQIADGEPGSEVYAVATKKDQAKLVWLESKRMV
KKSPALLKRIKPLVSEMVSEWNDSTFKPLGSDSETLDGLNVHGAMMDEIHAWKDKNLYDVIVDGTSSREQPMIFMITTAG
TVRESVYDMKYEEAEMLLNGLDDPDGYKDDRFLPIIYELDKREEWTDPSKWKKANPGLGSIKKIDQLETKVNKAKANSLL
VKNLLTKDFNIRETSTEAWLTFEQLNNPETFDIEKLKPSYGIGGCDLSSTTDLTAAKVIFMVPEDPHIYVKQMYWLPEDL
LEQRSKEDKIPYNLWHEQGILRTTPGNSVHYKFVTKWFLEIRDEYGIYLPWIGYDKWSAKYWVEEMEGYFGKESMIPIAQ
GKQTLSSPMKLLGADLESKLINYNNHTIDKWCLSNTAIDVDKNLNIQPNKTKNQRRRIDGTAALLNAYVVLQEKRNDYLN
MI

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 64641; Mature: 64641

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIQYLLSYNPIIEYYSLIESGKEIVSEKVRRIYKKLVSDIDDKESIYEYDSKKANHAIE
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHH
FIENFCKHSKGKWGGKPIVLEVWQKAFIAAAFGFVHGIDGTRKYREVLLVVARKNGKSTV
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEECCCCCCCC
GSGIGLYLQIADGEPGSEVYAVATKKDQAKLVWLESKRMVKKSPALLKRIKPLVSEMVSE
CCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHH
WNDSTFKPLGSDSETLDGLNVHGAMMDEIHAWKDKNLYDVIVDGTSSREQPMIFMITTAG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEECCC
TVRESVYDMKYEEAEMLLNGLDDPDGYKDDRFLPIIYELDKREEWTDPSKWKKANPGLGS
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCCCCCCCH
IKKIDQLETKVNKAKANSLLVKNLLTKDFNIRETSTEAWLTFEQLNNPETFDIEKLKPSY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHEEEHHHCCCCCCEEHHHCCCCC
GIGGCDLSSTTDLTAAKVIFMVPEDPHIYVKQMYWLPEDLLEQRSKEDKIPYNLWHEQGI
CCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHCCCE
LRTTPGNSVHYKFVTKWFLEIRDEYGIYLPWIGYDKWSAKYWVEEMEGYFGKESMIPIAQ
EEECCCCCEEHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHC
GKQTLSSPMKLLGADLESKLINYNNHTIDKWCLSNTAIDVDKNLNIQPNKTKNQRRRIDG
CHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHHHCCH
TAALLNAYVVLQEKRNDYLNMI
HHHHHHHHHHEEHHHCHHCCCC
>Mature Secondary Structure
MRIQYLLSYNPIIEYYSLIESGKEIVSEKVRRIYKKLVSDIDDKESIYEYDSKKANHAIE
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHH
FIENFCKHSKGKWGGKPIVLEVWQKAFIAAAFGFVHGIDGTRKYREVLLVVARKNGKSTV
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEECCCCCCCC
GSGIGLYLQIADGEPGSEVYAVATKKDQAKLVWLESKRMVKKSPALLKRIKPLVSEMVSE
CCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHH
WNDSTFKPLGSDSETLDGLNVHGAMMDEIHAWKDKNLYDVIVDGTSSREQPMIFMITTAG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEECCC
TVRESVYDMKYEEAEMLLNGLDDPDGYKDDRFLPIIYELDKREEWTDPSKWKKANPGLGS
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCCCCCCCH
IKKIDQLETKVNKAKANSLLVKNLLTKDFNIRETSTEAWLTFEQLNNPETFDIEKLKPSY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHEEEHHHCCCCCCEEHHHCCCCC
GIGGCDLSSTTDLTAAKVIFMVPEDPHIYVKQMYWLPEDLLEQRSKEDKIPYNLWHEQGI
CCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHCCCE
LRTTPGNSVHYKFVTKWFLEIRDEYGIYLPWIGYDKWSAKYWVEEMEGYFGKESMIPIAQ
EEECCCCCEEHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHC
GKQTLSSPMKLLGADLESKLINYNNHTIDKWCLSNTAIDVDKNLNIQPNKTKNQRRRIDG
CHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHHHCCH
TAALLNAYVVLQEKRNDYLNMI
HHHHHHHHHHEEHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]