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The map label for this gene is ytcD [H]

Identifier: 30263367

GI number: 30263367

Start: 3184683

End: 3185024

Strand: Reverse

Name: ytcD [H]

Synonym: BA_3462

Alternate gene names: 30263367

Gene position: 3185024-3184683 (Counterclockwise)

Preceding gene: 30263370

Following gene: 30263366

Centisome position: 60.93

GC content: 35.67

Gene sequence:

>342_bases
ATGAAAACATACAATATTCCTGTAGAGGCGACTTTACAGGTTATCGGTGGAAAGTGGAAAGTAGTAATCCTTTGTCATTT
AAAGAAAGACAAAAAGAGAACGTGCGAATTAAAACAATTAATGTCTGGTATTACACAAAAGATGTTAACGCAACAATTAC
GTGAATTAGAAGAAGACGGTGTAATCGAGAGAAAAGTGTATAACCAAGTGCCGCCAAAAGTAGAGTATTCGTTAACGGAA
TACGGTCATTCATTAGATGCTATACTTGATTCTCTTTGTAACTGGGGAGAACATCATCTTGAAAAGAATGGCAACACGTC
TATGCTTATTACAGCAGAATAA

Upstream 100 bases:

>100_bases
AGGGTAAAAAGTACGTACTTTAAGGTGCTATAGATACTTAAAAGTAATATTTAAATCTTTAGCTTACTTGCCTTATAACA
TTATTAAAGGAGATTTTTAT

Downstream 100 bases:

>100_bases
ACAAGAAAAAAACGAACGAGAATACGTTCGTTTTTTCTTTTTGTATAGAGGGAGATTTTTAAGCGGCATAATTACTTTTT
GTAATATAGGTACTTTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDGVIERKVYNQVPPKVEYSLTE
YGHSLDAILDSLCNWGEHHLEKNGNTSMLITAE

Sequences:

>Translated_113_residues
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDGVIERKVYNQVPPKVEYSLTE
YGHSLDAILDSLCNWGEHHLEKNGNTSMLITAE
>Mature_113_residues
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDGVIERKVYNQVPPKVEYSLTE
YGHSLDAILDSLCNWGEHHLEKNGNTSMLITAE

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=94, Percent_Identity=37.2340425531915, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12970; Mature: 12970

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDG
CCCCCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VIERKVYNQVPPKVEYSLTEYGHSLDAILDSLCNWGEHHLEKNGNTSMLITAE
CHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCHHHHHCCCCCCEEEEEEC
>Mature Secondary Structure
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDG
CCCCCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VIERKVYNQVPPKVEYSLTEYGHSLDAILDSLCNWGEHHLEKNGNTSMLITAE
CHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCHHHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]