Click here to switch to the map view.

The map label for this gene is ycfQ [C]

Identifier: 30261083

GI number: 30261083

Start: 960733

End: 961317

Strand: Reverse

Name: ycfQ [C]

Synonym: BA_0955

Alternate gene names: 30261083

Gene position: 961317-960733 (Counterclockwise)

Preceding gene: 30261084

Following gene: 30261082

Centisome position: 18.39

GC content: 31.62

Gene sequence:

>585_bases
ATGACAAAGGTAAAATTAATGAATCAAAAACGTGTGATTGAAGTAGCTGCAACATTATTTTTAGAAAAAGGGTTTGCTTA
TACAAGTATGGATGAATTAGTACGTGTAAGCAAAGTTTCAAAGTCTAATGTGTATTATCACTTTTCTAATAAGGAACAAT
TATTAGAAGGAGTCGTTGATTATTGGATTGAAATGTATCAATCTGCAATTGATGACGTACTTTCTCAGAACCAATTTTTG
GTTGAAAATCGTATCCAACTGTTTTTAAAGCAATTATCACAAGGAGTTCAGTCGAGAGAGTATAAGGGGGGCTGTCCATT
TATTACTCTTTATATTCAAAGTCCTACACAGGCCACGCAAATAAAAGAAAAAATAGGTCTTTTTTTTACAGGATTACAAG
AGAAAGTTTCTCTATTACTTAAACAAGGGGTAGAGAATGGAGAATTCAGAAATACGATTCATATTGATGAGGTTGCATCA
CTTTTTATTACAAATCTTGAAGGAGCGTTATTTATTTCAGAAACATTGAAAGATGCAACTGTAATCACGAAAACAGCAGA
TCATTTTTTTAAATTGCTTCGATAA

Upstream 100 bases:

>100_bases
TGCAGTAAAATCAATGTTGGTGGAACTTTTTTAATCAAACTTTTTTAAAAATTAACATAAATACTTGCAATATTTAAATT
AGTACTATATAGTTCTAGTT

Downstream 100 bases:

>100_bases
AAGAAGCTTTTTTTTACATCAAATTAGTACTAAACAGTACTACAAGGGGGATTTTATATGAGAACAGTATTTTTAACTGG
TGGAACAGGCTTTATTGGAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVDYWIEMYQSAIDDVLSQNQFL
VENRIQLFLKQLSQGVQSREYKGGCPFITLYIQSPTQATQIKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVAS
LFITNLEGALFISETLKDATVITKTADHFFKLLR

Sequences:

>Translated_194_residues
MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVDYWIEMYQSAIDDVLSQNQFL
VENRIQLFLKQLSQGVQSREYKGGCPFITLYIQSPTQATQIKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVAS
LFITNLEGALFISETLKDATVITKTADHFFKLLR
>Mature_193_residues
TKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVDYWIEMYQSAIDDVLSQNQFLV
ENRIQLFLKQLSQGVQSREYKGGCPFITLYIQSPTQATQIKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVASL
FITNLEGALFISETLKDATVITKTADHFFKLLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22247; Mature: 22116

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVD
CCCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
YWIEMYQSAIDDVLSQNQFLVENRIQLFLKQLSQGVQSREYKGGCPFITLYIQSPTQATQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHH
IKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHH
VITKTADHFFKLLR
HHHHHHHHHHHHHC
>Mature Secondary Structure 
TKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVD
CCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
YWIEMYQSAIDDVLSQNQFLVENRIQLFLKQLSQGVQSREYKGGCPFITLYIQSPTQATQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHH
IKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHH
VITKTADHFFKLLR
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10475962; 12004073 [H]