Click here to switch to the map view.

The map label for this gene is gerKA [H]

Identifier: 30260789

GI number: 30260789

Start: 652194

End: 653696

Strand: Reverse

Name: gerKA [H]

Synonym: BA_0635

Alternate gene names: 30260789

Gene position: 653696-652194 (Counterclockwise)

Preceding gene: 30260802

Following gene: 30260788

Centisome position: 12.51

GC content: 37.52

Gene sequence:

>1503_bases
ATGACAGAGCAAAAAGAACAACAAGAGAGTACGGGCCAAAAGCATATGTTTCCATCACTTCCGGAAAACATTAATTATAT
CGAAAATAAGCTCTGTCATTCAGACGATATAAAAAAATTAGATCTTCCTTTCCAAAATGGAAAGGGAACAATCTTATATA
TCGAATCTTTAGCAGACCCAAATTTGATTCACCAATTAGCTCTTGAGCCTTTATTAACTCGGTCGGATTTGTCTTTAGAT
AAAGCTTTTGCCACATTAAATATGAAAAAAGAAACAAATTTAAATTACGGTGTGCAACTTTTATTACAAGGAAAATCATT
ATATTTTCATGAACACGTCGACAGCTTTTGTATTTTTGAAACAGCTATATCTTTAAAAAGGGATATAGCTGAGCCTGATA
ATGAAGGAATTGTGCGCGGTCCACATACTGGCTTTGTAGAAGATTTAGCAACTAATTTAACTTCGATCCGTAAGCTCATA
AAAAGCCCAAATATCGTCGTTAAATATTTCACACTTGGTGAAGAGATGCACACGAAAGTGGCAATTGCTTATATGCAAAA
CATAGCGAATGACGATTTAGTTACAGAAGTAAAAAGAAGATTAGAAACGATTAAGACAGATGCACTTATGCCTCCAGGAT
ATATACAAGAATTTATAGAGGATACGTCTTTCTCACCATTTCCGCAGCAATTAAATACAGAGCGCCCAGATAGAGTCGCA
GCAAATTTAATGGAAGGACGAGTTGCTATTTTTTCTGATGGAGATCCAACAGCTCTTATCGTTCCTGTTACGTTATTTGC
TTTCTATCAATCACCGGATGATTACAATAACCGCTGGATTGTCGGTTCTTTCGTCCGAATGATTCGCTTAGTGAGTTTCT
TGATTGCTTTTCTCTTACCAGCTATATATATCGCAACCGTAGCCTTTCATCCTGATGTATTGCCACTTGAACTTGTGTAT
ACAATTAAAGCTTCATTAGAGAAAGTACCTCTTCCTCCTATTTTCGAAGCCCTCTTAATGGAGCTAATTTTCGAGTTATT
GCGGGAAGCTGGTATTCGCTTGCCGAGCCGAGTTGGACAAACAATCGGTATTGTAGGCGGTTTAGTAATTGGTGATGCGA
TTGTAAAAGCCGGACTCGTTTCTTACACAATGATTATCGTTGTAGCTTTAACTGCAATCTCATCTTTTCTCGTTCCATCA
AATGATATGAGTTCAGCAGTTCGGATTCTTCGATTTCCATTAATGCTCCTTGCTGCCCTATTCGGATATGTAGGAATATC
GTTCGGTCTCATTATAACTTTCGTTCATTTATGTCAGCTACATTCATTTCATACACCATATCTTTCTCCTGTTGCCCCAA
TGCGGATTAAAGATATGAAAGATTCTTTTGTAAGACTACCAATTTGGTCATTTTGGGAACGACCACATGATCCAAAACCG
AAAAAAATGCAACGACAACATGTAACGAGAGAGGAGGAGGACGGTGACAAACACGCAAAGTAA

Upstream 100 bases:

>100_bases
CGTAACTTTCAAGCTACTTTACCAAAAATAATCCAAGCATAAATTTCTCACAAAAAGCAAAAATTAACAGAAGTAACTTT
ATCTAAAAGAGGTGGAAATT

Downstream 100 bases:

>100_bases
AATTTCACTTGTTCAATTTACCTTTTTCGTTATTCAATGCCAAATTGGGGTCGGTATACTTTCTCTACCAAACCGTCTTC
ATCCGATAGCAAAAGGTGGT

Product: spore germination protein GerKA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MTEQKEQQESTGQKHMFPSLPENINYIENKLCHSDDIKKLDLPFQNGKGTILYIESLADPNLIHQLALEPLLTRSDLSLD
KAFATLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFETAISLKRDIAEPDNEGIVRGPHTGFVEDLATNLTSIRKLI
KSPNIVVKYFTLGEEMHTKVAIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVA
ANLMEGRVAIFSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLPAIYIATVAFHPDVLPLELVY
TIKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQTIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPS
NDMSSAVRILRFPLMLLAALFGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKP
KKMQRQHVTREEEDGDKHAK

Sequences:

>Translated_500_residues
MTEQKEQQESTGQKHMFPSLPENINYIENKLCHSDDIKKLDLPFQNGKGTILYIESLADPNLIHQLALEPLLTRSDLSLD
KAFATLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFETAISLKRDIAEPDNEGIVRGPHTGFVEDLATNLTSIRKLI
KSPNIVVKYFTLGEEMHTKVAIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVA
ANLMEGRVAIFSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLPAIYIATVAFHPDVLPLELVY
TIKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQTIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPS
NDMSSAVRILRFPLMLLAALFGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKP
KKMQRQHVTREEEDGDKHAK
>Mature_499_residues
TEQKEQQESTGQKHMFPSLPENINYIENKLCHSDDIKKLDLPFQNGKGTILYIESLADPNLIHQLALEPLLTRSDLSLDK
AFATLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFETAISLKRDIAEPDNEGIVRGPHTGFVEDLATNLTSIRKLIK
SPNIVVKYFTLGEEMHTKVAIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVAA
NLMEGRVAIFSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLPAIYIATVAFHPDVLPLELVYT
IKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQTIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPSN
DMSSAVRILRFPLMLLAALFGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKPK
KMQRQHVTREEEDGDKHAK

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 56425; Mature: 56294

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQKEQQESTGQKHMFPSLPENINYIENKLCHSDDIKKLDLPFQNGKGTILYIESLADP
CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEEECCCCH
NLIHQLALEPLLTRSDLSLDKAFATLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFE
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHCCCCCCEEEEEECCCEEEHHHHHHHHHHH
TAISLKRDIAEPDNEGIVRGPHTGFVEDLATNLTSIRKLIKSPNIVVKYFTLGEEMHTKV
HHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
AIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVA
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHCCCCHHHHH
ANLMEGRVAIFSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLP
HHHHHCCEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
AIYIATVAFHPDVLPLELVYTIKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPSNDMSSAVRILRFPLMLLAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEECCHHHHHCCCCCCCH
KKMQRQHVTREEEDGDKHAK
HHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TEQKEQQESTGQKHMFPSLPENINYIENKLCHSDDIKKLDLPFQNGKGTILYIESLADP
CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEEECCCCH
NLIHQLALEPLLTRSDLSLDKAFATLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFE
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHCCCCCCEEEEEECCCEEEHHHHHHHHHHH
TAISLKRDIAEPDNEGIVRGPHTGFVEDLATNLTSIRKLIKSPNIVVKYFTLGEEMHTKV
HHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
AIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVA
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHCCCCHHHHH
ANLMEGRVAIFSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLP
HHHHHCCEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
AIYIATVAFHPDVLPLELVYTIKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPSNDMSSAVRILRFPLMLLAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEECCHHHHHCCCCCCCH
KKMQRQHVTREEEDGDKHAK
HHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]