Click here to switch to the map view.

The map label for this gene is int [H]

Identifier: 30260592

GI number: 30260592

Start: 447387

End: 448511

Strand: Reverse

Name: int [H]

Synonym: BA_0427

Alternate gene names: 30260592

Gene position: 448511-447387 (Counterclockwise)

Preceding gene: 30260593

Following gene: 30260587

Centisome position: 8.58

GC content: 32.71

Gene sequence:

>1125_bases
ATGAAAGGATACTTTAGAAAACGTGGTGAAAAGTGGTCATTTACTATTGATATTGGGAAAGATCCTATCACTGGAAAAAG
AAAACAAAAAACAGCATCAGGCTTTAAAACAAAGAAAGAAGCCGAACGTGCATGCAATGAGCTTATCCATCAATTCAACA
CTGGAAGTCTAGTTGATGATAAGAATTTTACTCTTAGTGAGTATTTACAAGAATGGCTAGAAAATACAGCTAAACAAAGA
GTAAGAGAAACTACATTCACCAATTATAAAAGAGCTATAAATAGTCGAATTATACCTGTGCTTGGTTCGCATAAATTAAA
GGATTTAAAACCCTTGCATGGACAACGATTCGTTAAATCCTTAATTGATGAAGGGTTGTCACCTGCGTATATTGAATATA
TTTTCATTGTTTTAAAAGGATCATTAGAAGACGCTGTTAGGTGGGAGCTCCTGTTTAAAAACCCATTTCAACATGTGGAA
ATACCTCGACCACGAAAAGTGGTCAATTCTACGTGGTCAATTGAAGAAACGAAAAAATTCTTAAATCGTACAAAATTTGA
AAATGTCATCTATTATCATCTTTTCTTATTGGCATTAAATACAGGTATGAGACGTGGTGAAATACTTGGTCTAAAGTGGA
AGAATTTCGATTTGAATGAAGGTAAAATAAGCGTTACAGAAACACTCATTTATGATGAGAACGGATTTAGATTTACAGAA
CCCAAAACACATGGATCAAAACGCTTAATTTCTATCGATCAAAACTTATGTAAAGAATTTAAGTCTTATAAAGCTAAACA
AAATGAGTTCAAATTATTATTTGGGCAGTCATACGAGGATAATGATTTAGTTTTTGCTAAAGAAACTGGACAGCCAATAT
TACCACGAACTATGACAACTACTTTTAATCAATTTATAAAAAAAGCCGATGTACCTCAAATTAGGTTTCACGACTTACGA
CATACGCATGCAACAATTTTATTGAAGCTAGGTATTAATCCAAAAATCGTAAGTGAGCGTTTAGGACATAGTTCAATTAA
GACCACATTAGACACTTACAGTCATGTTACTATAGATATGCAAGAAAGTGCTGTTTTAAAGCTAAGTGAGGCATTAAAAT
CATAA

Upstream 100 bases:

>100_bases
AGTTTACCATAAAGTAACTCAGATGAGTTGCTTTTTCCTTTTTCTGATACTGGAATTATTTGTGCTATTAGAATACTATT
AGTTCAAGGAGGTATGGATA

Downstream 100 bases:

>100_bases
AAAAATTGTTGATGTGGTCAGAATGTGGTCAAACCCATCAACAATTTCATTGAAACCCCTTTATTTCAGCGTTAATTTAA
CTACGTTCTCAACATGAGCT

Product: prophage LambdaBa04, site-specific recombinase phage integrase family protein protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MKGYFRKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEAERACNELIHQFNTGSLVDDKNFTLSEYLQEWLENTAKQR
VRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKSLIDEGLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVE
IPRPRKVVNSTWSIEETKKFLNRTKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTE
PKTHGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTTTFNQFIKKADVPQIRFHDLR
HTHATILLKLGINPKIVSERLGHSSIKTTLDTYSHVTIDMQESAVLKLSEALKS

Sequences:

>Translated_374_residues
MKGYFRKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEAERACNELIHQFNTGSLVDDKNFTLSEYLQEWLENTAKQR
VRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKSLIDEGLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVE
IPRPRKVVNSTWSIEETKKFLNRTKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTE
PKTHGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTTTFNQFIKKADVPQIRFHDLR
HTHATILLKLGINPKIVSERLGHSSIKTTLDTYSHVTIDMQESAVLKLSEALKS
>Mature_374_residues
MKGYFRKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEAERACNELIHQFNTGSLVDDKNFTLSEYLQEWLENTAKQR
VRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKSLIDEGLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVE
IPRPRKVVNSTWSIEETKKFLNRTKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTE
PKTHGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTTTFNQFIKKADVPQIRFHDLR
HTHATILLKLGINPKIVSERLGHSSIKTTLDTYSHVTIDMQESAVLKLSEALKS

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43486; Mature: 43486

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGYFRKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEAERACNELIHQFNTGSLVDD
CCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEECC
KNFTLSEYLQEWLENTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHH
LIDEGLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVEIPRPRKVVNSTWSIEETKKF
HHHCCCCHHHHHHHHHHHCCCHHHHHEEHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHH
LNRTKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTE
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCEECC
PKTHGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTT
CCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHHHH
TFNQFIKKADVPQIRFHDLRHTHATILLKLGINPKIVSERLGHSSIKTTLDTYSHVTIDM
HHHHHHHHCCCCCHHHHHHHHCEEEEEEEECCCHHHHHHHCCCHHHHHHHHCCCEEEEEC
QESAVLKLSEALKS
CHHHHHHHHHHHCC
>Mature Secondary Structure
MKGYFRKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEAERACNELIHQFNTGSLVDD
CCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEECC
KNFTLSEYLQEWLENTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHH
LIDEGLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVEIPRPRKVVNSTWSIEETKKF
HHHCCCCHHHHHHHHHHHCCCHHHHHEEHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHH
LNRTKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTE
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCEECC
PKTHGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTT
CCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHHHH
TFNQFIKKADVPQIRFHDLRHTHATILLKLGINPKIVSERLGHSSIKTTLDTYSHVTIDM
HHHHHHHHCCCCCHHHHHHHHCEEEEEEEECCCHHHHHHHCCCHHHHHHHHCCCEEEEEC
QESAVLKLSEALKS
CHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]