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The map label for this gene is ydcA [H]

Identifier: 30260425

GI number: 30260425

Start: 237459

End: 238031

Strand: Reverse

Name: ydcA [H]

Synonym: BA_0249

Alternate gene names: 30260425

Gene position: 238031-237459 (Counterclockwise)

Preceding gene: 30260432

Following gene: 30260408

Centisome position: 4.55

GC content: 36.82

Gene sequence:

>573_bases
ATGCTCATACCATCCGCCCGCATTTCCTTACAACCAATCGCCATCTCTTTACTTCTCATACAATTCATTATGATTATGTT
AGGCGATTTTTTCCTCTTTCCTATGGCAGCTTATCATGAATATATCGCTAATGGAGAATGGTGGCGTCTCATAACTTCCC
TGTTCGTACATGTAGACTTACAACATTTTCTTTCTAATAGTATTTGTTTATTCGTCCTTGGCTCTTCTATTGAAAAACAA
CTAGGCCGCTTTTCTTTCATCATTATTTTTTTCCTTTCTGGCATTCTCGGAAATATTTTCTCTTATCTTATTATGCCCCA
TGAATATATTCATGCCGGGGCATCTGGTGGTATTTTCGGATTGCTAGGTGCACAGTTATTTCTATTGTATAGCCGATATC
GTTCTTCCAATCCAAAAGACATTGCTATTTTTTCAATCATGATATGTATATTACTACTATTCACTTTCTTCAATCCCTCT
GCCAACCCTATCAGCCATTTAACAGGATTGGTCATTGGTGGTATTTGCACCCCTTTATTAATAAAAAAACTCGATGGTGC
AGAGCTCATTTAA

Upstream 100 bases:

>100_bases
ACAATCATTTCAAAATCCCCTTCTTCTATTTAGCTTTCTTTTTTCATATTGTAAGAATAACAGAGAATCTTTCTGATGCA
AAAGGAGTGATACTCATAAC

Downstream 100 bases:

>100_bases
TATAAAAGCTCGCACCATCGATAATTTCCACATCTGTTTGTTCACTTAAATCCCTCATAAGTTGAAATAAAGACTCATCC
TTCATCTTCGCTTCAATCAT

Product: rhomboid family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQ
LGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPS
ANPISHLTGLVIGGICTPLLIKKLDGAELI

Sequences:

>Translated_190_residues
MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQ
LGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPS
ANPISHLTGLVIGGICTPLLIKKLDGAELI
>Mature_190_residues
MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQ
LGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPS
ANPISHLTGLVIGGICTPLLIKKLDGAELI

Specific function: Not Yet Known. [C]

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 21236; Mature: 21236

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFG
HHHHCCCCEEEHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHH
LLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPSANPISHLTGLVIGGICTPLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IKKLDGAELI
HHHCCCCCCC
>Mature Secondary Structure
MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFG
HHHHCCCCEEEHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHH
LLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPSANPISHLTGLVIGGICTPLL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IKKLDGAELI
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]