Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 30260357

GI number: 30260357

Start: 171380

End: 171871

Strand: Reverse

Name: rpoE [C]

Synonym: BA_0169

Alternate gene names: 30260357

Gene position: 171871-171380 (Counterclockwise)

Preceding gene: 30260358

Following gene: 30260356

Centisome position: 3.29

GC content: 30.69

Gene sequence:

>492_bases
ATGGGAAAAGAAAATATATTGACCTCCTATCTTATCAATTTAGGGGAGGAAGTGTTCAAACTATTATTAGCGAAAGGGGC
TATAAAAGAAGACGCAGAAGACATCATCCAAAATACTTTCTATAAAGTATATACGTTGCTAGATGACCTAACAGAGAATA
ACATACGTCCATGGTTTTTTAGGGTTGCATTAAACGAATACATTGACTTGAAGAGAAAAAAAGAGCAACAGAACATCTAT
TTAACTGAAGAGATTTATTCAAAATTACAATATACAGACCGAGAACTGGATGCTGTTTTAAATAAAGATGAGATTTTCTA
TCTATTAAAAGATATAAAACTAGAATATAAAGAAGCCTTCTTTTTAAAGTATTATTACGATTTTACATATGAAGAAATTG
CACTAATACTAGATATTCGAGTAAATAGCGTCAAACAAAAGTTACATCGTGCACGTAAAACAATTCATTCTACAGTAGGG
GGAAAACCTTAA

Upstream 100 bases:

>100_bases
TGTTATATGCCTTTTTTATTTGTATCAAGAACAAAACTTTAATTTAAGTGTATACATTTACTATTACCTATTCGTTGTAT
AAGTGTAGGGAGGAAAAATG

Downstream 100 bases:

>100_bases
TGGATACTTCTTTAAAAAATGCATTAAAAAAAGCGCAAAGGAAACAGTTACTTAAAATCATCATTACTTCTATTCTCGTT
GTCATCATACTTATCCCTAT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigY; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70factor; RNA Polymerase Sigma Subunit Ecf Family; RNA Polymerase ECF-Type Sigma Factor SigH; RNA Polymerase Factor Sigma C; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor Sigma; Sigma-70 Factor

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MGKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIY
LTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVG
GKP

Sequences:

>Translated_163_residues
MGKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIY
LTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVG
GKP
>Mature_162_residues
GKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIYL
TEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVGG
KP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19496; Mature: 19364

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFF
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RVALNEYIDLKRKKEQQNIYLTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAF
HHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHH
FLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVGGKP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFF
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RVALNEYIDLKRKKEQQNIYLTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAF
HHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHH
FLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVGGKP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA