Click here to switch to the map view.

The map label for this gene is yjiX

Identifier: 30065584

GI number: 30065584

Start: 4535229

End: 4535432

Strand: Reverse

Name: yjiX

Synonym: S4641

Alternate gene names: 30065584

Gene position: 4535432-4535229 (Counterclockwise)

Preceding gene: 30065585

Following gene: 30065583

Centisome position: 98.61

GC content: 50.0

Gene sequence:

>204_bases
ATGTTTGGTAACTTAGGACAGGCAAAAAAATATCTCGGCCAGGCGGCGAAGATGTTGATTGGTATTCCAGACTACGACAA
CTACGTCGAGCATATGAAGACCAACCATCCCGACAAGCCGTACATGAGCTATGAAGAATTCTTCCGCGAACGCCAGAACG
CGCGCTACGGCGGCGATGGTAAAGGCGGTATGCGCTGTTGTTAA

Upstream 100 bases:

>100_bases
CCGTACGTTCCAATCCCGGAAGGCGGCGTGAAGATCTCTTCGCACCACTAACCGTGTTTAGCCCCGCTTCGGCGGGGCTT
TGTTCTTATCAGAGTGAACT

Downstream 100 bases:

>100_bases
TGGAGAGAGCATGAACCCGATTGCAGTTACCCTACTCACCGGTTTTTTAGGCGCGGGCAAAACTACCCTGCTGCGCCATA
TTCTTAACGAACAACACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSYEEFFRERQNARYGGDGKGGMRCC

Sequences:

>Translated_67_residues
MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSYEEFFRERQNARYGGDGKGGMRCC
>Mature_67_residues
MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSYEEFFRERQNARYGGDGKGGMRCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybdD

Homologues:

Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=100, Blast_Score=142, Evalue=4e-36,
Organism=Escherichia coli, GI87081761, Length=67, Percent_Identity=73.134328358209, Blast_Score=105, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJIX_ECO57 (P0ADD0)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   H91292
- RefSeq:   NP_290968.1
- RefSeq:   NP_313339.1
- ProteinModelPortal:   P0ADD0
- EnsemblBacteria:   EBESCT00000027376
- EnsemblBacteria:   EBESCT00000057610
- GeneID:   913597
- GeneID:   959701
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5952
- KEGG:   ecs:ECs5312
- GeneTree:   EBGT00050000009874
- HOGENOM:   HBG668379
- OMA:   GKVSRCC
- ProtClustDB:   CLSK880908
- BioCyc:   ECOL83334:ECS5312-MONOMER
- InterPro:   IPR007423

Pfam domain/function: PF04328 DUF466

EC number: NA

Molecular weight: Translated: 7729; Mature: 7729

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
7.5 %Met     (Translated Protein)
10.4 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
7.5 %Met     (Mature Protein)
10.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSYEEFFRERQNARYGGDG
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCC
KGGMRCC
CCCCCCC
>Mature Secondary Structure
MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSYEEFFRERQNARYGGDG
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCC
KGGMRCC
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796