Click here to switch to the map view.

The map label for this gene is yrfB

Identifier: 30065324

GI number: 30065324

Start: 4282039

End: 4282479

Strand: Direct

Name: yrfB

Synonym: S4351

Alternate gene names: 30065324

Gene position: 4282039-4282479 (Clockwise)

Preceding gene: 30065323

Following gene: 30065325

Centisome position: 93.1

GC content: 53.51

Gene sequence:

>441_bases
ATGAACATGTTCTTTGACTGGTGGTTCGCCACATCACCCCGCCTCCGCCAGTTTTGCTGGGCATTCTGGTTGCTGATGTT
AGTTACGCTCATTTTTCTATCATCGACACACCATGAAGAGCGCGACGCATTAATTCGACTACGGGCAAGTCATCACCAGC
AGTGGGCCGCACTGTATCGCCTGGTAGACACCACTCCCTTCAGCGAGGAAAAAACGCTGCCCTTTTCGCCACTGGATTTT
CAGTTATCCGGCGCGCAACTGGTTTCCTGGCATCCATCCGCGCAGGGAGGTGAGTTGGCGTTGAAAACGCTGTGGGAAGC
AGTGCCGTCGGCATTTACACGGCTGGCAGAGCGCAACGTCAGCGTGAGCCGTTTTTCGTTAAGCGTGGAAGGTGATGATC
TTTTGTTCACGCTACAACTGGAGATGCCGCATGAGGGTTAA

Upstream 100 bases:

>100_bases
CGCCAGGATGCGTCTTTTCATCTCAATCAGCGGGGAGCCACGCAGCAGGATGCGCAGGGACGCTGGCAATTTGAGTATCA
GTTAACAAGGAAGGTTAGCG

Downstream 100 bases:

>100_bases
ACGCTGGTTGTTGGCAGGTATTGCATTGTGCCTTTTAACCGGTATGCGTGACCCTTTTAAATCGCCGGAAGATCTATATG
CCGGATTAGCGAACTTAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTTPFSEEKTLPFSPLDF
QLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLEMPHEG

Sequences:

>Translated_146_residues
MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTTPFSEEKTLPFSPLDF
QLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLEMPHEG
>Mature_146_residues
MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTTPFSEEKTLPFSPLDF
QLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLEMPHEG

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789795, Length=146, Percent_Identity=97.9452054794521, Blast_Score=290, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16941; Mature: 16941

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYR
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LVDTTPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNV
HHCCCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
SVSRFSLSVEGDDLLFTLQLEMPHEG
CEEEEEEEECCCCEEEEEEECCCCCC
>Mature Secondary Structure
MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYR
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LVDTTPFSEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNV
HHCCCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
SVSRFSLSVEGDDLLFTLQLEMPHEG
CEEEEEEEECCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]