Click here to switch to the map view.

The map label for this gene is yrfD

Identifier: 30065322

GI number: 30065322

Start: 4280710

End: 4281516

Strand: Direct

Name: yrfD

Synonym: S4349

Alternate gene names: 30065322

Gene position: 4280710-4281516 (Clockwise)

Preceding gene: 30065320

Following gene: 30065323

Centisome position: 93.07

GC content: 57.74

Gene sequence:

>807_bases
GTGACGGGTGATAAGGAGATCATCACAATGACATTTAAGATCTGGCAAATTGGTTTGCATTTACAACAGCAAGAAGCGGC
AGCGGTTGCGATCGTGCGGGGCGCAAAAGAATGCTTTTTGCAACGCTGGTGGCGGTTGCCGCTGGCGCACGACATTATCA
AAGATGGGCGGATTGTTGATGCGCAGCAGCTGGCTAAAACGTTGTTACCGTGGAGTCGCGAACTGCCGCAGCGTCATCAC
ATTATGTTGGCGTTTCCCGCCAGTCGCACATTACAGCGGTCATTTCCGCGCCCGTCGATGTCCCTTGGTGAGCGGGAGCA
AACGGCCTGGCTGTCAGGGACGATGGCCCGCGAGCTGGATATGGATCCGGACTCCCTGCGCTTCGATTACAGCGAAGACT
CACTCAGCCCCGCTTATAACGTGACTGCCGCGCAAAGCAAAGAGCTGGCAACGCTGCTTACGCTGGCAGAAAGGTTGCGT
GTTCATGTTAGTGCGATCACCCCGGATGCCAGTGCATTACAGCGATTCCTGCCTTTTTTACCTTCTCATCAGCAATGTCT
GGCCTGGCGTGATAACGAACAGTGGCTGTGGGCGACGCGCTATAGCTGGGGGCGCAAACTGGCGGTGGGGATGACTAGCG
CGAAGGAGCTGGCGGCAGCGTTATCCGTTGATCCCGACAGCGTCGCGATATGTGGCGAAGGCGGATTTGACCCCTGGGAG
GCCGTTTCTGTTCGTCAGCCGCCGCTACCGCCGCCTGGTGGAGACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGC
GTACTGA

Upstream 100 bases:

>100_bases
AACTTCACTGGAAATTTCCCATTTAGTTTCATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGAC
GCATTGATATACCCGTCAGA

Downstream 100 bases:

>100_bases
TGAATCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTT
GCGCCTCTGCTGCTGGCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MTGDKEIITMTFKIWQIGLHLQQQEAAAVAIVRGAKECFLQRWWRLPLAHDIIKDGRIVDAQQLAKTLLPWSRELPQRHH
IMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLR
VHVSAITPDASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPDSVAICGEGGFDPWE
AVSVRQPPLPPPGGDFAIALGLALGKAY

Sequences:

>Translated_268_residues
MTGDKEIITMTFKIWQIGLHLQQQEAAAVAIVRGAKECFLQRWWRLPLAHDIIKDGRIVDAQQLAKTLLPWSRELPQRHH
IMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLR
VHVSAITPDASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPDSVAICGEGGFDPWE
AVSVRQPPLPPPGGDFAIALGLALGKAY
>Mature_267_residues
TGDKEIITMTFKIWQIGLHLQQQEAAAVAIVRGAKECFLQRWWRLPLAHDIIKDGRIVDAQQLAKTLLPWSRELPQRHHI
MLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRV
HVSAITPDASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPDSVAICGEGGFDPWEA
VSVRQPPLPPPGGDFAIALGLALGKAY

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=259, Percent_Identity=98.0694980694981, Blast_Score=518, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29943; Mature: 29811

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGDKEIITMTFKIWQIGLHLQQQEAAAVAIVRGAKECFLQRWWRLPLAHDIIKDGRIVD
CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEC
AQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELD
HHHHHHHHCCHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCC
MDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFL
CCCCCEEECCCCCCCCCCEEECHHCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCC
PSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPDSVAICGEGGFDPWE
CCCCHHEEEECCCCEEEEEECCCCCEEEEECCCHHHHHHHHCCCCCCEEEECCCCCCHHH
AVSVRQPPLPPPGGDFAIALGLALGKAY
CCCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TGDKEIITMTFKIWQIGLHLQQQEAAAVAIVRGAKECFLQRWWRLPLAHDIIKDGRIVD
CCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEC
AQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELD
HHHHHHHHCCHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCC
MDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFL
CCCCCEEECCCCCCCCCCEEECHHCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCC
PSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPDSVAICGEGGFDPWE
CCCCHHEEEECCCCEEEEEECCCCCEEEEECCCHHHHHHHHCCCCCCEEEECCCCCCHHH
AVSVRQPPLPPPGGDFAIALGLALGKAY
CCCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]