| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is yhiI
Identifier: 30065238
GI number: 30065238
Start: 4178757
End: 4179824
Strand: Direct
Name: yhiI
Synonym: S4260
Alternate gene names: 30065238
Gene position: 4178757-4179824 (Clockwise)
Preceding gene: 30065237
Following gene: 30065239
Centisome position: 90.86
GC content: 59.18
Gene sequence:
>1068_bases ATGGATAAGAGTAAGCGCCATCTGGCGTGGTGGGTTGTCGGGGCACTGGCGGTGGCTGCCGTCGTGGCGTGGTGGCTGTT GCGCCCGGCGGGTGTGCCGGAAGGCTTTGCTGTCAGCAATGGGCGCATTGAAGCGACGGAAGTGGATATCGCCAGCAAAA TTGCCGGGCGTATCGACACCATTCTGGTGAAAGAAGGCCAGTTTGTTCGCGAAGGCGAAGTGCTGGCGAAGATGGATACT CGCGTGTTGCAGGAACAGCGACTGGAAGCCATCGCGCAAATCAAAGAGGCACAAAGCGCCGTTGCCGCCGCGCAGGCTTT GCTGGAGCAACGACAAAGTGAAACTCGTGCCGCACAGTCGCTGGTCAATCAACGCCAGGCCGAACTGGACTCTGTTGCCA AACGTCATACGCGTTCCCGCTCGCTCGCCCAACGAGGGGCTATTTCTGCGCAACAGCTGGATGACGACCGCGCCGCCGCT GAGAGCGCCCGAGCTGCGCTGGAATCAGCGAAAGCCCAGGTTTCGGCTTCTAAAGCGGCTATAGAAGCAGCACGCACCAA TATCATTCAGGCGCAAACTCGGGTCGAAGCAGCGCAAGCCACTGAACGGCGCATTGCCGCAGATATCGATGACAGTGAAC TGAAAGCCCCGCGTGACGGACGCGTGCAGTATCGGGTTGCCGAGCCAGGGGAAGTGCTGGCGGCAGGCGGTCGGGTGCTG AATATGGTCGATCTCAGCGACGTCTATATGACCTTCTTCCTGCCAACCGAACAGGCGGGCACGCTGAAACTGGGCGGTGA AGCCCGGCTGATCCTCGATGCCGCGCCAGATCTGCGTATTCCTGCAACCATCAGTTTTGTCGCCAGTGTCGCCCAGTTCA CGCCAAAAACCGTCGAAACCAGCGATGAACGGCTGAAACTGATGTTCCGCGTCAAAGCGCGTATCCCACCGGAATTACTC CAGCAGCATCTGGAATATGTCAAAACCGGTTTACCGGGCGTAGCGTGGGTGCGGGTGAATGAAGAACTTCCGTGGCCTGA CGACCTCGTGGTGAGGTTGCCGCAATGA
Upstream 100 bases:
>100_bases GTCGTTTCCTTCTTATCCCGGATGGAAGAATCCGCTGAACGTCGTTCGGCGGCAGTTGTAACACGCGTCGTTTGCTTACA GGGATTATGGCGGGTCGATT
Downstream 100 bases:
>100_bases CGCATCTGGAACTGGTTCCCGTCCCGCCTGTCGCGCAACTGGCGGGCGTGAGCCAGCATTATGGAAAAACCGTTGCGCTG AACAATATCACTCTCGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDT RVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAA ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELL QQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
Sequences:
>Translated_355_residues MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDT RVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAA ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELL QQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ >Mature_355_residues MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDT RVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAA ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELL QQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789900, Length=355, Percent_Identity=99.1549295774648, Blast_Score=696, Evalue=0.0, Organism=Escherichia coli, GI1787013, Length=277, Percent_Identity=30.3249097472924, Blast_Score=105, Evalue=6e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003997 - InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 38773; Mature: 38773
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDT CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEEHHHHHHHHHHHHHHE ILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQS EEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH IEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCCHHHHCCCCEE NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVET EEEEHHHEEEEEEECCCCCCEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC SDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHEEECCC >Mature Secondary Structure MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDT CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEEHHHHHHHHHHHHHHE ILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQS EEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH IEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCCHHHHCCCCEE NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVET EEEEHHHEEEEEEECCCCCCEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC SDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]