Click here to switch to the map view.

The map label for this gene is slp

Identifier: 30065208

GI number: 30065208

Start: 4142263

End: 4142862

Strand: Reverse

Name: slp

Synonym: S4227

Alternate gene names: 30065208

Gene position: 4142862-4142263 (Counterclockwise)

Preceding gene: 30065209

Following gene: 30065207

Centisome position: 90.07

GC content: 44.67

Gene sequence:

>600_bases
ATGGTTTTAATATTTGTTGATAAGGATAGTAACATGAACATGACAAAAGGTGCACTCATCCTCAGCCTTTCATTTTTGCT
TGCCGCATGTAGTTCAATTCCGCAAAATATCAAAGGCAATAACCAACCTGATATTCAAAAAAGTTTTGTTGCTGTTCATA
ACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACG
TTGTTAGAAATCGCTGTATTACCGTTGGATAGCTATGCGAAGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGC
CAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGTACCATTCAGGGTGAACAAC
CAGGCTTTATCAATAAAGTCCCGTATAACTTCCTGGAAGTGAATATGCAGGGCATCCAGGTGTGGCATTTGAGAGAAGTG
GTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACAC
CAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAA

Upstream 100 bases:

>100_bases
AATTGAACTAAACAGAAGGGATATAAACATCAGACAGGTTTACGTTACTATCAGGCATATCACCTCAGAATCAGATGAAA
ACTATAAAGAAATATCTATT

Downstream 100 bases:

>100_bases
CACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGTATTACATAAAATTAATATACAGTAAGCTAACTATTA
TTATTATAAGCCCTGTCCTG

Product: outer membrane protein induced after carbon starvation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MVLIFVDKDSNMNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDT
LLEIAVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREV
VNTTYNLWDYGYGAFWPEPGWGAPYYTNAVSQVTPELVK

Sequences:

>Translated_199_residues
MVLIFVDKDSNMNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDT
LLEIAVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREV
VNTTYNLWDYGYGAFWPEPGWGAPYYTNAVSQVTPELVK
>Mature_199_residues
MVLIFVDKDSNMNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDT
LLEIAVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREV
VNTTYNLWDYGYGAFWPEPGWGAPYYTNAVSQVTPELVK

Specific function: The induction of slp may help to stabilize the outer membrane during carbon starvation and stationary phase [H]

COG id: COG3065

COG function: function code M; Starvation-inducible outer membrane lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082278, Length=188, Percent_Identity=99.468085106383, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1788108, Length=149, Percent_Identity=43.6241610738255, Blast_Score=129, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004658 [H]

Pfam domain/function: PF03843 Slp [H]

EC number: NA

Molecular weight: Translated: 22211; Mature: 22211

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLIFVDKDSNMNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYV
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEEECCCCEEE
GQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRN
CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
HFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYGYGAFWPEPG
EEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHHHCCCCCCCCCCCC
WGAPYYTNAVSQVTPELVK
CCCCHHHCHHHHCCHHHCC
>Mature Secondary Structure
MVLIFVDKDSNMNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYV
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEEECCCCEEE
GQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRN
CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
HFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYGYGAFWPEPG
EEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHHHCCCCCCCCCCCC
WGAPYYTNAVSQVTPELVK
CCCCHHHCHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8022277; 8041620; 9278503 [H]