Click here to switch to the map view.

The map label for this gene is yhjC

Identifier: 30065197

GI number: 30065197

Start: 4130019

End: 4130990

Strand: Reverse

Name: yhjC

Synonym: S4214

Alternate gene names: 30065197

Gene position: 4130990-4130019 (Counterclockwise)

Preceding gene: 30065199

Following gene: 30065196

Centisome position: 89.82

GC content: 52.16

Gene sequence:

>972_bases
ATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAATCGGTCAAAGAAATGGATAA
AATTCACGCAATGCAGTTGTTCATCAAAGTCGCGGAGCTGGAAAGTTTTTCCCGCGCGGCGGATTTCTTTGCTTTGCCAA
AGGGAAGTGTTTCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACTACGCGACGGGTC
AAACTCACGCCAGAAGGCATGACCTATTATCAACGGGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTT
TCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGTCAGGAATCGCGAAAAACCTGTTACTGCCGC
GTCTGTCGGAATTTCTCTATCAGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATAACCGTCCGGTAGATATTCTTCAT
GATGGTTTTGATTGCGTGATACGCACTGGCGCGTTACCGGAAGATGGCGTTATCGCCCGTCCCCTCGGCAAACTAACCAT
GGTCAACTGTGCCAGTCCGCACTATCTGACGCGCTTTGGTTATCCGCAAAGCCCCGATGATCTGACTTCACACGCAATAG
TGCGTTATACACCGCACCTGGGTGTACATCCGTTAGGTTTTGAGGTTGCCAGCGTTAATGGCGTCCAGTGGTTTAAGTCT
GGCGGCATGTTGACGGTAAACAGTAGCGAAAACTATCTCGCCGCCGGTCTTGCCGGTCTGGGGATTATTCAGATCCCGCG
CATTGCCGTGCGCGAAGCCCTGCGTGCCGGGCGGCTTATTGAAGTGTTGCCAGGCTACCGTGCCGAGCCGCTCTCCCTTT
CGCTGGTTTACCCGCAGCGTCGGGAGCTTTCCCGGCGTGTAAACCTGTTTATGCAGTGGCTGGCTGGCGTAATGAAAGAG
CACCTGGACTGA

Upstream 100 bases:

>100_bases
CTGTTTAAGGGGATTCACCTTTCTCATAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGTCATGACAAC
ATTGTGAAACCCGGCATTAG

Downstream 100 bases:

>100_bases
CCGACTATACTTTTTAAGAATGACCACGACAGAAGGACAAAAGAGCGGATGACGCAGGAAAACGAGATCAAACGTCCCAC
CCAGGATCTGGAGCACGAGC

Product: putative transcriptional regulator LYSR-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELSSHNRPVDILH
DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD

Sequences:

>Translated_323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELSSHNRPVDILH
DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD
>Mature_323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELSSHNRPVDILH
DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=97.9933110367893, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=31.438127090301, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=29.3515358361775, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.4246575342466, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=28.0141843971631, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=29.0969899665552, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=28.0936454849498, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789173, Length=301, Percent_Identity=26.578073089701, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=25.177304964539, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=31.0344827586207, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790011, Length=294, Percent_Identity=23.1292517006803, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=308, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=26.643598615917, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36069; Mature: 36069

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPSGIAKNLLLPRLSEFLYQHPGIELELSSHNRPVDILHDGFDCVIRTGALPEDGVIAR
ECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCHHHEEECCCCCCCCEEEC
PLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
CCCCEEEEECCCCCHHHHCCCCCCCHHHHHCEEEEECCCCCCCCCCEEEEECCCHHHCCC
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCCHHHHHHHCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEHLD
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPSGIAKNLLLPRLSEFLYQHPGIELELSSHNRPVDILHDGFDCVIRTGALPEDGVIAR
ECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCHHHEEECCCCCCCCEEEC
PLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
CCCCEEEEECCCCCHHHHCCCCCCCHHHHHCEEEEECCCCCCCCCCEEEEECCCHHHCCC
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCCHHHHHHHCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEHLD
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]