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The map label for this gene is yidP

Identifier: 30064994

GI number: 30064994

Start: 3885713

End: 3886387

Strand: Direct

Name: yidP

Synonym: S3991

Alternate gene names: 30064994

Gene position: 3885713-3886387 (Clockwise)

Preceding gene: 30064992

Following gene: 161486397

Centisome position: 84.48

GC content: 51.56

Gene sequence:

>675_bases
ATGATCTACAAAAGCATTGCGGAGCGGTTAAGAATTCGACTTAATTCCGCGGATTTCACGCTAAACAGCCTTCTTCCCGG
TGAAAAAAAGCTGGCGGAAGAGTTTGCGGTATCGCGGATGACTATCCGTAAAGCCATTGACCTGCTGGTAGCGTGGGGGC
TGGTGGTCCGCCGCCACGGCAGCGGCACTTACCTGGTGCGCAAAGATGTGCTGCATCAAACCGCCAGCCTGACCGGACTG
GTGGAGGTGTTAAAACGGCAGGGAAAAACGGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCAT
TGCCAGCCAGTTACGGATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTAA
TGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAACCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATAT
ATTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGATGCCGGTGCTCGCCGATAGACTGCTGGCGCG
GCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTCGTTGTCATATAGCGAGAGCGGGGAGTTTTTGAATT
ATTCAGTGATGTTCAGAAATGCCAGCGAATACTAG

Upstream 100 bases:

>100_bases
CAGCATCGAACACATCTTTAAAAAAAAGATTTTTTTCAATCGATTAAGCAGAACTTGTGGGCGCATTACCCGTGCTTGCA
GGCAAAAAAGAGAGCTAGAG

Downstream 100 bases:

>100_bases
GTGGAGTACCATTTACGGCGACTCCACCCGGAAAAAAGTTAACCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGT
GATAATGCGCAGGAACATCA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGL
VEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
IEQECGILIGGNYESLMPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEY

Sequences:

>Translated_224_residues
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGL
VEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
IEQECGILIGGNYESLMPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEY
>Mature_224_residues
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGL
VEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
IEQECGILIGGNYESLMPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEY

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=224, Percent_Identity=99.5535714285714, Blast_Score=454, Evalue=1e-129,
Organism=Escherichia coli, GI1786950, Length=223, Percent_Identity=31.390134529148, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI87082252, Length=223, Percent_Identity=24.6636771300448, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790540, Length=206, Percent_Identity=28.1553398058252, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788418, Length=148, Percent_Identity=25, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 25584; Mature: 25584

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHG
CCHHHHHHHHHEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
SGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIY
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHEEECCEEE
FSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEYIEQECGILIGGNYESLMPVL
EEHEEEEECCCEEEEECCCCHHHHHHCCCHHHCCCCHHHHHHHHCCEEECCCHHHHHHHH
ADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEY
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHG
CCHHHHHHHHHEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
SGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIY
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHEEECCEEE
FSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEYIEQECGILIGGNYESLMPVL
EEHEEEEECCCEEEEECCCCHHHHHHCCCHHHCCCCHHHHHHHHCCEEECCCHHHHHHHH
ADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEY
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]