| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is sat [H]
Identifier: 30064971
GI number: 30064971
Start: 3860121
End: 3860627
Strand: Direct
Name: sat [H]
Synonym: S3965
Alternate gene names: 30064971
Gene position: 3860121-3860627 (Clockwise)
Preceding gene: 30064968
Following gene: 30064974
Centisome position: 83.93
GC content: 44.18
Gene sequence:
>507_bases ATGTTCACAACAAAAGGTATTGATATCTCCGGTGAACTGACTATGATGGGAATCCCTGAACAGAATAGTAAAACTGTAAC GCCGGGTCTCCACTACGCTGCTGATGGATTCAGGCTGAGTGGTGGAAATGCAAATTTCATTGCCAGAAATATGGCATCTG TCACCGGAAATATTTATGCTGATGATGCAGCAACCATTACTCTGGGACAGCCTGAAACTGAAACACCGACTATATCGTCT GCTTATCAGGCATGGGCAGAGACTCTTTTGTATGGCTTTGATACCGCCTATCGAGGCGCAATAACAGCCCCCAAAGCTAC AGTTAGCATGAATAATGCGATCTGGCATCTAAATAGCCAGTCATCAATTAATCGTCTAGAAACAAAAGACAGTATGGTGC GTTTTACTGGTGACAATGGGAAGTTTACAACCCTTACAGTGGACAACCTTACTATAGATGACAGTGCATTTGTGCTGCGT GCAAATCTGGCCCAAGCAGATCAGTGA
Upstream 100 bases:
>100_bases CATAGGTGATCAAGCTGTAGTTACACTTAATGGTGCAACCTTTCTGAATAATACTCCTATAAGTATAGATAAAGGAGCAA AAGTTATAGCACAAAATTCC
Downstream 100 bases:
>100_bases GGTGTACTGGCAATAGCGGACACTACCATTTGTTCTTTTTTTAAGCAGCCATCTGATGATATTTTTCCCTGAAGGCTGCC GGGGAGATATTCCCCAGACG
Product: putative secreted autotransporter toxin
Products: NA
Alternate protein names: Secreted autotransporter toxin sat [H]
Number of amino acids: Translated: 168; Mature: 168
Protein sequence:
>168_residues MFTTKGIDISGELTMMGIPEQNSKTVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPETETPTISS AYQAWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTGDNGKFTTLTVDNLTIDDSAFVLR ANLAQADQ
Sequences:
>Translated_168_residues MFTTKGIDISGELTMMGIPEQNSKTVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPETETPTISS AYQAWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTGDNGKFTTLTVDNLTIDDSAFVLR ANLAQADQ >Mature_168_residues MFTTKGIDISGELTMMGIPEQNSKTVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPETETPTISS AYQAWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTGDNGKFTTLTVDNLTIDDSAFVLR ANLAQADQ
Specific function: Shows serine protease activity and displays cytophatic activity, including elongation, rounding, and detachment of a proportion of the cells from monolayer in culture. Triggers vacuolation within the cytoplasm of the human bladder and kidney cells [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Serine protease sat translocator:Cell outer membrane; Multi-pass membrane protein. Note=The cleaved C-terminal fragment (autotransporter domain) is localized in the outer membrane (By similarity) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 peptidase S6 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR006315 - InterPro: IPR012332 - InterPro: IPR011050 - InterPro: IPR000710 [H]
Pfam domain/function: PF03797 Autotransporter; PF02395 Peptidase_S6 [H]
EC number: NA
Molecular weight: Translated: 18069; Mature: 18069
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTTKGIDISGELTMMGIPEQNSKTVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYA CCCCCCCCCCCCEEEEECCCCCCEEECCCCEEECCCEEEECCCCCEEEECHHHHCCCEEE DDAATITLGQPETETPTISSAYQAWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQ CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCEECCCCEEEEECCEEEEECCC SSINRLETKDSMVRFTGDNGKFTTLTVDNLTIDDSAFVLRANLAQADQ CCCHHHCCCCCEEEEECCCCEEEEEEECCEEECCCEEEEEECCCCCCC >Mature Secondary Structure MFTTKGIDISGELTMMGIPEQNSKTVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYA CCCCCCCCCCCCEEEEECCCCCCEEECCCCEEECCCEEEECCCCCEEEECHHHHCCCEEE DDAATITLGQPETETPTISSAYQAWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQ CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCEECCCCEEEEECCEEEEECCC SSINRLETKDSMVRFTGDNGKFTTLTVDNLTIDDSAFVLRANLAQADQ CCCHHHCCCCCEEEEECCCCEEEEEEECCEEECCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11029690; 12471157 [H]