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The map label for this gene is ygiD

Identifier: 30064389

GI number: 30064389

Start: 3163418

End: 3164233

Strand: Reverse

Name: ygiD

Synonym: S3284

Alternate gene names: 30064389

Gene position: 3164233-3163418 (Counterclockwise)

Preceding gene: 30064391

Following gene: 30064384

Centisome position: 68.8

GC content: 53.68

Gene sequence:

>816_bases
ATGACACCTTTAGTTAAGGATATCATCATGTCTTCAACACGTATGCCAGCATTGTTTTTAGGTCACGGTAGTCCGATGAA
CGTGCTGGAAGATAATTTGTATACCCGCAGCTGGCAGAAGTTGGGGATGACATTGCCACGCCCGCAAGCGATTGTGGTGG
TTTCGGCTCACTGGTTTACCCGTGGAACAGGAGTGACCGCGATGGAGACGCCGCCCACGATTCATGACTTTGGTGGCTTC
CCGCAGGCGCTGTACGATACGCATTATCCTGCTCCGGGTTCGCCTGCGCTGGCACAGCGTCTGGTTGAGCTGTTAGCGCC
GATCCCGGTGACGCTGGATAAAGAAGCCTGGGGCTTTGACCACGGCTCGTGGGGCGTGCTGATTAAGATGTATCCTGACG
CCGATATCCCTATGGTGCAGTTGAGTATCGACAGTAGCAAACCTGCCGCCTGGCATTTCGAAATGGGGCGCAAACTCGCG
GCGCTGCGTGATGAAGGAATAATGTTGGTCGCCAGCGGTAACGTGGTGCATAACCTGCGCACAGTGAAGTGGCACGGTGA
TAGTTCACCGTATCCGTGGGCGACGTCGTTTAATGAGTATGTGAAAGCGAATCTGACGTGGCAAGGGCCGGTAGAGCAGC
ATCCTCTGGTGAATTATCTCGACCATGAAGGTGGCGCGTTATCGAACCCAACGCCAGAGCACTATCTGCCGTTGTTGTAT
GTGTTAGGTGTGTGGGATGGGCAGGAGCCAATTACCATTCCGGTCGATGGTATAGAAATGGGCAGTTTAAGTATGCTGTC
GGTGCAGATAGGCTAA

Upstream 100 bases:

>100_bases
AATCTTCACCTTCAGGCAGATCGTCAAAATAACTGATGATCATCATCATTGTTATCCGGGTTCTTACTCCGCCGAACAAG
CGTATTGTGAGGATATCAAA

Downstream 100 bases:

>100_bases
CAATTACCGGATGGCGAGTGCCATCCGGTATCGTGGCTTATTCAACAAAAATATGTGGATAAAACCGAGACATATCCTGG
GTGATCAACGCACGGTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGF
PQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA
ALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
VLGVWDGQEPITIPVDGIEMGSLSMLSVQIG

Sequences:

>Translated_271_residues
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGF
PQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA
ALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
VLGVWDGQEPITIPVDGIEMGSLSMLSVQIG
>Mature_270_residues
TPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFP
QALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAA
LRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLYV
LGVWDGQEPITIPVDGIEMGSLSMLSVQIG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=98.8549618320611, Blast_Score=531, Evalue=1e-152,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29888; Mature: 29756

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFT
CCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEE
RGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFD
CCCCCEEECCCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
HGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLR
CCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHCCCEEEECCCCEEEEECCCEEEEEE
TVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
EEEECCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHCEEE
VLGVWDGQEPITIPVDGIEMGSLSMLSVQIG
EEECCCCCCCEEEEECCCCCCCEEEEEEEEC
>Mature Secondary Structure 
TPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFT
CHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEE
RGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFD
CCCCCEEECCCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
HGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLR
CCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHCCCEEEECCCCEEEEECCCEEEEEE
TVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
EEEECCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHCEEE
VLGVWDGQEPITIPVDGIEMGSLSMLSVQIG
EEECCCCCCCEEEEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]