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The map label for this gene is yfdZ [H]

Identifier: 30063785

GI number: 30063785

Start: 2478246

End: 2479484

Strand: Reverse

Name: yfdZ [H]

Synonym: S2583

Alternate gene names: 30063785

Gene position: 2479484-2478246 (Counterclockwise)

Preceding gene: 30063788

Following gene: 30063783

Centisome position: 53.91

GC content: 55.13

Gene sequence:

>1239_bases
ATGGCTGACACTCGCCCTGAACGTCGCTTTACGCGCATTGATCGTCTCCCGCCCTACGTTTTTAACATCACCGCTGAACT
GAAAATGGCTGCGCGTCGGCGCGGCGAAGATATTATCGATTTCAGCATGGGTAACCCGGACGGTGCGACTCCGCCGCATA
TCGTCGAAAAATTATGTACTGTGGCCCAGCGCCCGGACACGCATGGTTACTCCACTTCACGCGGCATTCCGCGGTTACGT
CGCGCCATTTCCCGCTGGTATCAGGATCGCTACGACGTTGAAATCGACCCGGAATCAGAAGCCATCGTCACTATTGGTTC
GAAAGAGGGCCTGGCGCATCTGATGCTGGCGACGCTGGATCATGGTGACACGGTGCTGGTGCCGAATCCAAGTTACCCGA
TCCATATTTATGGCGCGGTGATTGCCGGGGCGCAGGTACGCTCAGTGCCGCTGGTGGAAGGTGTCGATTTCTTCAACGAA
CTGGAGCGCGCCATTCGTGAAAGTTATCCGAAACCGAAGATGATGATCCTCGGCTTCCCGTCGAACCCAACCGCGCAATG
CGTGGAACTGGAGTTCTTCGAAAAGGTTGTGGCGCTGGCGAAATGCTACGATGTGCTGGTGGTCCATGACCTGGCCTATG
CCGATATCGTCTACGATGGCTGGAAAGCGCCGTCAATTATGCAGGTGCCGGGTGCACGCGATGTGGCGGTCGAGTTCTTT
ACGCTGTCGAAAAGCTACAACATGGCGGGCTGGCGTATCGGCTTTATGGTCGGCAACAAAACGCTGGTCAGTGCCCTGGC
GCGAATCAAAAGCTATCACGATTACGGCACTTTTACGCCGTTGCAGGTGGCGGCGATTGCGGCACTCGAGGGCGATCAAC
AGTGCGTGCGCGACATTGCCGAACAGTACAAACGCCGTCGTGATGTATTGGTTAAAGGGCTGCATGAAGCGGGCTGGATG
GTCGAAATGCCGAAGGCTTCGATGTATGTCTGGGCGAAAATCCCGGAACCATATGCGGCCATGGGATCGCTGGAATTTGC
CAAGAAGCTCCTTAACGAAGCGAAGGTTTGTGTCTCGCCGGGGATTGGCTTTGGCGACTATGGTGATACGCATGTTCGCT
TTGCACTGATTGAAAACCACGACCGTATTCGTCAGGCCATCAGAGGGATTAAAGCGATGTTCCGTGCCGACGGTTTACTA
CCCGTCAGCAGCAAACATATTCACGAAAACGCGGAATAA

Upstream 100 bases:

>100_bases
CGCTGGACAGACAGAAATTAATCAGGCTATTTTCAAAACAGCCACCATTGTGGCAGCGTCGCTCGGACGGTCCGGGCGCT
AACGTTAATCTGAGGAAATT

Downstream 100 bases:

>100_bases
ACACCGTCGTCAGAAATGCAAACAGGAGCCTGATGGCTCCTGTTTTTCATTGCACAGTTTGCTTTTAGATCATCAGGGCA
AAAGTACCGGCCCAAACGAT

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLR
RAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKCYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWM
VEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENHDRIRQAIRGIKAMFRADGLL
PVSSKHIHENAE

Sequences:

>Translated_412_residues
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLR
RAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKCYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWM
VEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENHDRIRQAIRGIKAMFRADGLL
PVSSKHIHENAE
>Mature_411_residues
ADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRR
AISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNEL
ERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKCYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFFT
LSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMV
EMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENHDRIRQAIRGIKAMFRADGLLP
VSSKHIHENAE

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=421, Percent_Identity=25.41567695962, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI56713256, Length=421, Percent_Identity=25.41567695962, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI95147551, Length=417, Percent_Identity=22.5419664268585, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI169881279, Length=417, Percent_Identity=22.5419664268585, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI169881281, Length=231, Percent_Identity=22.0779220779221, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1788722, Length=412, Percent_Identity=99.2718446601942, Blast_Score=845, Evalue=0.0,
Organism=Escherichia coli, GI1786816, Length=337, Percent_Identity=25.2225519287834, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788627, Length=376, Percent_Identity=26.063829787234, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787710, Length=312, Percent_Identity=26.2820512820513, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788332, Length=226, Percent_Identity=27.8761061946903, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17567369, Length=398, Percent_Identity=23.6180904522613, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71994472, Length=365, Percent_Identity=24.3835616438356, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71994476, Length=365, Percent_Identity=24.3835616438356, Blast_Score=115, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6322401, Length=393, Percent_Identity=21.1195928753181, Blast_Score=86, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6320317, Length=350, Percent_Identity=24, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28573069, Length=340, Percent_Identity=27.0588235294118, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24646114, Length=340, Percent_Identity=27.0588235294118, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI28573067, Length=340, Percent_Identity=27.0588235294118, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI28573065, Length=340, Percent_Identity=27.0588235294118, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI45551451, Length=379, Percent_Identity=25.065963060686, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641770, Length=379, Percent_Identity=25.065963060686, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641760, Length=379, Percent_Identity=25.065963060686, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641768, Length=379, Percent_Identity=25.065963060686, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641766, Length=379, Percent_Identity=25.065963060686, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641764, Length=379, Percent_Identity=25.065963060686, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 46173; Mature: 46042

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT
CCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
VAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD
HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCHHHHHHHEEC
HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP
CCCEEEECCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
SNPTAQCVELEFFEKVVALAKCYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCHHEEEEE
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA
EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
EQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCHHHHCCHHHHHHHHHCCCEEECC
GIGFGDYGDTHVRFALIENHDRIRQAIRGIKAMFRADGLLPVSSKHIHENAE
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
>Mature Secondary Structure 
ADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT
CCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
VAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD
HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCHHHHHHHEEC
HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP
CCCEEEECCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
SNPTAQCVELEFFEKVVALAKCYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCCHHEEEEE
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA
EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
EQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCHHHHCCHHHHHHHHHCCCEEECC
GIGFGDYGDTHVRFALIENHDRIRQAIRGIKAMFRADGLLPVSSKHIHENAE
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]