| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yfcM [H]
Identifier: 30063752
GI number: 30063752
Start: 2431783
End: 2432331
Strand: Reverse
Name: yfcM [H]
Synonym: S2537
Alternate gene names: 30063752
Gene position: 2432331-2431783 (Counterclockwise)
Preceding gene: 30063753
Following gene: 30063751
Centisome position: 52.88
GC content: 50.27
Gene sequence:
>549_bases ATGAACAGTACACACCACTACGAGCAGTTGATTGAAATTTTTAATAGCTGCTTTGCCGATGAATTTAATACCCGTCTGAT TAAAGGCGACGACGAACCGATCTATCTTCCTGCTGATGCGGAAGTACCGTATAACCGAATCGTCTTTGCTCATGGCTTTT ATGCCAGCGCAATTCATGAGATTTCGCACTGGTGTATTGCCGGAAAAGCGCGCCGTGAGCTGGTTGATTTCGGCTACTGG TATTGCCCGGACGGACGCGATGCCCAGACGCAAAGCCAGTTTGAAGATGTTGAAGTGAAGCCGCAGGCGTTCGACTGGTT ATTCTGCGTGGCGGCTGGATATCCGTTTAACGTCAGTTGCGACAATCTGGAAGGGGATTTCGAACCGGATCGTGTGGTGT TTCAACGGCGGGTACATGCGCAGGTGATGGATTATCTGACAAATGGCATTCCGGAACGCCCGGCACGCTTCATTAAAGCA CTACAAAATTATTATCACACGCCGGAACTTACGGCGGAACAGTTCCCGTGGCCGGAAGCGCTCAACTGA
Upstream 100 bases:
>100_bases TGATCCGCCCGATGATTGTTATCGTCTCGGCGGTGATGAGTGCCAAATTACTTTACGATAGCCACGGACAGGAGATCCTC CACTGGTTGGGGATGAACTA
Downstream 100 bases:
>100_bases AGCCAGCGCCACGTTTTACAATGAGGAAAGAAGATGATCGCGGAGTTTGAATCACGCATTCTGGCATTAATCGACGGCAT GGTTGACCATGCCAGTGATG
Product: putative transporting ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPYNRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYW YCPDGRDAQTQSQFEDVEVKPQAFDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA LQNYYHTPELTAEQFPWPEALN
Sequences:
>Translated_182_residues MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPYNRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYW YCPDGRDAQTQSQFEDVEVKPQAFDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA LQNYYHTPELTAEQFPWPEALN >Mature_182_residues MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPYNRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYW YCPDGRDAQTQSQFEDVEVKPQAFDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA LQNYYHTPELTAEQFPWPEALN
Specific function: Unknown
COG id: COG3101
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_1563 [H]
Homologues:
Organism=Escherichia coli, GI1788666, Length=182, Percent_Identity=98.9010989010989, Blast_Score=380, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007411 [H]
Pfam domain/function: PF04315 DUF462 [H]
EC number: NA
Molecular weight: Translated: 21194; Mature: 21194
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPYNRIVFAHGFYASAIHE CCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEECCCCCCCCCEEEEECCHHHHHHHH ISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQAFDWLFCVAAGYPFNVSC HHHHHHCCHHHHHHHHCCCEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC DNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKALQNYYHTPELTAEQFPWPEA CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCC LN CC >Mature Secondary Structure MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPYNRIVFAHGFYASAIHE CCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEECCCCCCCCCEEEEECCHHHHHHHH ISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQAFDWLFCVAAGYPFNVSC HHHHHHCCHHHHHHHHCCCEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC DNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKALQNYYHTPELTAEQFPWPEA CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCC LN CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]