| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is menE
Identifier: 30063691
GI number: 30063691
Start: 2365835
End: 2367190
Strand: Reverse
Name: menE
Synonym: S2473
Alternate gene names: 30063691
Gene position: 2367190-2365835 (Counterclockwise)
Preceding gene: 30063692
Following gene: 30063683
Centisome position: 51.47
GC content: 56.19
Gene sequence:
>1356_bases ATGATCTTCTCTGACTGGCCGTGGCGTCACTGGCGGCAAGTGCGGGGAGAAGCCATCGCCTTACGTCTTAATGACGAGCA ACTCAACTGGCGCGAGCTTTGTGCTCGCGTCGATGAGTTAGCTACGGGCTATGCGGTGCAGGGGGTGGTTGAGGGCAGCG GCGTGATGTTGCGGGCGTGGAATACGCCGCAAACGCTGCTCGCCTGGCTGGCGTTACTGCAATGCGGGGCGCGGGTGTTG CCCGTGAACCCTCAGCTGCCGCAACCGTTGCTTGAAGAATTGCTGCCCAATCTGACGCTGCAATTTGCGCTGGTGCCGGA TGGGGAAAACACGTTTCCGGCATTAACGTCGCTGCACATTCAGCTGGTTGAAGGCGTACATGCCGCTGCGTGGCAGCCGA CGCGTCTGTGCTCAATGACGTTGACCTCGGGTTCTACCGGTTTGCCGAAAGCCGCTGTCCATACTTATCAGGCCCATCTT GCCAGTGCGCAAGGTGTGTTATCGCTGATTCCGTTTGGCGATCACGATGACTGGTTGCTCTCTTTACCGCTGTTTCACGT CTCCGGTCAGGGAATTATGTGGCGCTGGTTATACGCTGGTGCGCGGATGACGGTGCGTGATAAACAGCCATTGGAGCAAA TGCTGGCAGGCTGTACTCACGCTTCACTGGTGCCAACACAACTCTGGCGTTTGCTGGTTAACCGCAGTTCCGTTTCCCTG AAAGCGGTGTTACTTGGCGGCGCGGCTATCCCGGTCGAGTTGACGGAACAGGCGCGCGAGCAGGGGATTCGTTGCTTTTG CGGCTATGGTCTGACCGAGTTTGCCTCCACGGTATGTGCGAAAGAAGCCGACGGCCTGGCAGACGTTGGTTTGCCGCTGC CGGGTCGGGAAGTGAAAATCGTTAATAATGAAGTGTGGCTGCGGGCTGCCAGTATGGCAGAAGGTTACTGGCGTAACGGG CAACTGGTTTCACTGGTTAATGACGAAGGCTGGTACGCTACGCGCGATCGCGGTGAGATGCATAATGGCAAGCTGACCAT TGTCGGACGTTTAGACAATCTGTTCTTCAGTGGCGGTGAGGGTATTCAGCCGGAAGAAGTCGAGCGTGTTATTGCTGCAC ATCCTGCGGTTTTGCAGGTGTTTATCGTTTCCGTTGCCGACAAGGAGTTTGGTCATCGGCCGGTAGCGGTGGTGGAGTAT GACCAGCAAACCGTTGATCTTGGCGAATGGGTGAAAGATAAGCTGGCTCGTTTTCAACAACCGGTGCGCTGGCTGACTTT ACCGCCGGAGCTGAAAAACGGCGGTATTAAAATTTCACGTCAGGCGCTAAAAGAGTGGGTGCAACGTCAGCAATAA
Upstream 100 bases:
>100_bases CGGGACTGGACACGCTGGATCTGATGCAGGCGCAGCAGGTTCGTCGCTGGCCGGGGAGCCCACTGCCGTTAGTGGACGCT GATGTACAGGAGCAGTTGTT
Downstream 100 bases:
>100_bases TTAACCCTCCGTTTCACTTCTCATTTCTGCCATTCCATTGCCGTTGATAAAGAGTTTATCTGTTAATCTGTAAATTGATG TGAAAACTCTTAGCAAACAG
Product: O-succinylbenzoic acid--CoA ligase
Products: NA
Alternate protein names: o-succinylbenzoyl-CoA synthetase; OSB-CoA synthetase [H]
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGYAVQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVL PVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHIQLVEGVHAAAWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGCTHASLVPTQLWRLLVNRSSVSL KAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFASTVCAKEADGLADVGLPLPGREVKIVNNEVWLRAASMAEGYWRNG QLVSLVNDEGWYATRDRGEMHNGKLTIVGRLDNLFFSGGEGIQPEEVERVIAAHPAVLQVFIVSVADKEFGHRPVAVVEY DQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQQ
Sequences:
>Translated_451_residues MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGYAVQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVL PVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHIQLVEGVHAAAWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGCTHASLVPTQLWRLLVNRSSVSL KAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFASTVCAKEADGLADVGLPLPGREVKIVNNEVWLRAASMAEGYWRNG QLVSLVNDEGWYATRDRGEMHNGKLTIVGRLDNLFFSGGEGIQPEEVERVIAAHPAVLQVFIVSVADKEFGHRPVAVVEY DQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQQ >Mature_451_residues MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGYAVQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVL PVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHIQLVEGVHAAAWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGCTHASLVPTQLWRLLVNRSSVSL KAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFASTVCAKEADGLADVGLPLPGREVKIVNNEVWLRAASMAEGYWRNG QLVSLVNDEGWYATRDRGEMHNGKLTIVGRLDNLFFSGGEGIQPEEVERVIAAHPAVLQVFIVSVADKEFGHRPVAVVEY DQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQQ
Specific function: Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl- CoA (OSB-CoA) [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily [H]
Homologues:
Organism=Homo sapiens, GI122937307, Length=421, Percent_Identity=24.9406175771971, Blast_Score=71, Evalue=3e-12, Organism=Escherichia coli, GI1788595, Length=451, Percent_Identity=97.3392461197339, Blast_Score=859, Evalue=0.0, Organism=Escherichia coli, GI145693145, Length=350, Percent_Identity=25.1428571428571, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI221142682, Length=496, Percent_Identity=22.7822580645161, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1786810, Length=507, Percent_Identity=23.2741617357002, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1788107, Length=352, Percent_Identity=26.4204545454545, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI32563687, Length=461, Percent_Identity=25.5965292841649, Blast_Score=124, Evalue=9e-29, Organism=Caenorhabditis elegans, GI17558820, Length=473, Percent_Identity=26.215644820296, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17531443, Length=499, Percent_Identity=24.8496993987976, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994703, Length=342, Percent_Identity=27.7777777777778, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71994694, Length=342, Percent_Identity=27.4853801169591, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71994690, Length=342, Percent_Identity=27.4853801169591, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI25141359, Length=400, Percent_Identity=24.25, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17557194, Length=492, Percent_Identity=22.9674796747967, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17538037, Length=495, Percent_Identity=22.4242424242424, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560308, Length=295, Percent_Identity=25.7627118644068, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24581924, Length=531, Percent_Identity=22.4105461393597, Blast_Score=86, Evalue=8e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR010192 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.26 [H]
Molecular weight: Translated: 50141; Mature: 50141
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGYAVQGVVEGSGVMLRAW CCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEEEC NTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHI CCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH QLVEGVHAAAWQPTRLCSMTLTSGSTGLPKAAVHTYQAHLASAQGVLSLIPFGDHDDWLL HHHHCHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCEEE SLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGCTHASLVPTQLWRLLVNRSSVSL EEEEEEECCCCEEEEEEECCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEE KAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFASTVCAKEADGLADVGLPLPGREVKI EEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE VNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYATRDRGEMHNGKLTIVGRLDNLFFSGGE ECCCEEEEEHHHHCCCCCCCEEEEEEECCCCEEECCCCCCCCCEEEEEEEECCCEECCCC GIQPEEVERVIAAHPAVLQVFIVSVADKEFGHRPVAVVEYDQQTVDLGEWVKDKLARFQQ CCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC PVRWLTLPPELKNGGIKISRQALKEWVQRQQ CCEEEECCHHHCCCCEEEEHHHHHHHHHHCC >Mature Secondary Structure MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGYAVQGVVEGSGVMLRAW CCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEEEC NTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHI CCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH QLVEGVHAAAWQPTRLCSMTLTSGSTGLPKAAVHTYQAHLASAQGVLSLIPFGDHDDWLL HHHHCHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCEEE SLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGCTHASLVPTQLWRLLVNRSSVSL EEEEEEECCCCEEEEEEECCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEE KAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFASTVCAKEADGLADVGLPLPGREVKI EEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE VNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYATRDRGEMHNGKLTIVGRLDNLFFSGGE ECCCEEEEEHHHHCCCCCCCEEEEEEECCCCEEECCCCCCCCCEEEEEEEECCCEECCCC GIQPEEVERVIAAHPAVLQVFIVSVADKEFGHRPVAVVEYDQQTVDLGEWVKDKLARFQQ CCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC PVRWLTLPPELKNGGIKISRQALKEWVQRQQ CCEEEECCHHHCCCCEEEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8626063; 9205837; 9278503 [H]