| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yeiT [H]
Identifier: 30063590
GI number: 30063590
Start: 2236278
End: 2237516
Strand: Direct
Name: yeiT [H]
Synonym: S2360
Alternate gene names: 30063590
Gene position: 2236278-2237516 (Clockwise)
Preceding gene: 30063589
Following gene: 30063599
Centisome position: 48.62
GC content: 51.33
Gene sequence:
>1239_bases ATGCCGCAACAAAATTATCTGGATGAACTCACTCCGGCTTTTACGCCGTTACTGGCGATTAAAGAAGCCTCTCGCTGTTT ATTATGTCACGACGCTCCCTGTAGTCAGGCTTGCCCGGCACAGACCGATCCGGGGAAATTTATTCGCTCAATCTACTTTC GTAATTTTAAAGGCGCTGCCGAGACAATTCGCGAAAATAATGCCCTCGGTGCCGTTTGTGCCAGAGTGTGCCCGACGGAG AAATTATGCCAAAGCGGTTGTACCCGTGCCGGTGTTGATGCTCCCATTGATATCGGCCGCTTACAGCGTTTTGTTACTGA TTTTGAACAACAAACCGGGATGGAAATTTATCAGCCCGGTACTAAAACGCTCGGCAAAGTCGCGATTATTGGCGCAGGTC CTGCCGGATTGCAGGCCAGTGTGACACTGACAAACCAGGGTTATGACGTCACGATTTATGAGAAAGAAGCGCACCCCGGT GGCTGGTTGCGTAACGGTATTCCGCAATTCCGGTTACCGCAATCAGTGCTGGATGCAGAGATCGCCCGTATTGAAAAAAT GGGCGTGACCATTAAGTGCAATAACGAAATCGGTAAAACACTCACCCTGGAGCAACTGAAAGCGGAAAACCGCGCGGTAC TGGTCACCGTGGGGTTATCAAGCGGTTCCGGGCTACCGCTGTTTGAGCATAGCGACGTTGAGATTGCCGTCGACTTCCTG CAACGTGTACGACAGGCGCAAGGCGATATCAGCATTCCACAAAGCGCATTAATTATCGGCGGCGGTGATGTCGCGATGGA CGTAGCCAGCACGCTGAAAGTTCTCGGCTGTCAGGCGGTAACTTGCGTAGCACGTGAAGAGTTAGATGAGTTTCCGGCAA GCGAAAAAGAGTTTGCCAGCGCCCGGGAGCTGGGCGTTTCGATCATCGATGGATTCACGCCAGTAGCCGTGGAAGGCAAT AAAGTCACGTTTAAGCATGTACGGTTATCAGGCGAACTGACGATGGCGGCAGATAAAATTATTCTCGCCGTCGGTCAGCA TGCCAGACTGGATGCCTTTGCGGAGTTAGAGCAGCAGCGTAACACCATCAAAACACAAAATTATCAGATCCGCGATCCGC AAGTCTTTGCTGCTGGCGATATTGTTGAGGGTGACAAAACCGTGGTCTATGCCGTGAAAACCGGGAAAGAAGCCGCCGAG GCGATTCATCACTATTTAGAGGGAGCTTGCTCATGTTAA
Upstream 100 bases:
>100_bases CTTTCACAGCTTAAATTTCCCCACGCGCATAGCCTTAATATCAGCACGCAATATTTATTTAGCGTTCGCCATAATTACTC ATAGCATTAAGGAAGATCAC
Downstream 100 bases:
>100_bases CGAAAGATCTTTCGATTACTTTTTGCGGCGTGAACTTTCCCAACCCGTTCTGCCTCTCTTCTTCGCCGGTAGGCAACTGC TATGAGATGTGTGCCAAAGC
Product: putative oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTE KLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPG GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEIGKTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFL QRVRQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFASARELGVSIIDGFTPVAVEGN KVTFKHVRLSGELTMAADKIILAVGQHARLDAFAELEQQRNTIKTQNYQIRDPQVFAAGDIVEGDKTVVYAVKTGKEAAE AIHHYLEGACSC
Sequences:
>Translated_412_residues MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTE KLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPG GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEIGKTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFL QRVRQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFASARELGVSIIDGFTPVAVEGN KVTFKHVRLSGELTMAADKIILAVGQHARLDAFAELEQQRNTIKTQNYQIRDPQVFAAGDIVEGDKTVVYAVKTGKEAAE AIHHYLEGACSC >Mature_411_residues PQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEK LCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGG WLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEIGKTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFLQ RVRQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFASARELGVSIIDGFTPVAVEGNK VTFKHVRLSGELTMAADKIILAVGQHARLDAFAELEQQRNTIKTQNYQIRDPQVFAAGDIVEGDKTVVYAVKTGKEAAEA IHHYLEGACSC
Specific function: Unknown
COG id: COG0493
COG function: function code ER; NADPH-dependent glutamate synthase beta chain and related oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli glutamate synthase [NADPH] small chain (GltD) and to E.coli AegA [H]
Homologues:
Organism=Homo sapiens, GI119943098, Length=437, Percent_Identity=31.350114416476, Blast_Score=178, Evalue=7e-45, Organism=Homo sapiens, GI237757300, Length=90, Percent_Identity=48.8888888888889, Blast_Score=90, Evalue=3e-18, Organism=Escherichia coli, GI1788468, Length=412, Percent_Identity=98.3009708737864, Blast_Score=833, Evalue=0.0, Organism=Escherichia coli, GI1788811, Length=449, Percent_Identity=31.8485523385301, Blast_Score=194, Evalue=8e-51, Organism=Escherichia coli, GI1789606, Length=442, Percent_Identity=31.2217194570136, Blast_Score=185, Evalue=4e-48, Organism=Escherichia coli, GI87082180, Length=449, Percent_Identity=28.9532293986637, Blast_Score=163, Evalue=2e-41, Organism=Escherichia coli, GI1789243, Length=398, Percent_Identity=29.3969849246231, Blast_Score=139, Evalue=3e-34, Organism=Caenorhabditis elegans, GI71984108, Length=441, Percent_Identity=33.3333333333333, Blast_Score=174, Evalue=9e-44, Organism=Caenorhabditis elegans, GI17570289, Length=452, Percent_Identity=27.6548672566372, Blast_Score=143, Evalue=1e-34, Organism=Saccharomyces cerevisiae, GI6320030, Length=461, Percent_Identity=25.5965292841649, Blast_Score=126, Evalue=7e-30, Organism=Drosophila melanogaster, GI24640763, Length=434, Percent_Identity=31.7972350230415, Blast_Score=166, Evalue=2e-41, Organism=Drosophila melanogaster, GI18858217, Length=434, Percent_Identity=31.7972350230415, Blast_Score=166, Evalue=2e-41, Organism=Drosophila melanogaster, GI24665547, Length=444, Percent_Identity=27.7027027027027, Blast_Score=131, Evalue=7e-31, Organism=Drosophila melanogaster, GI24665543, Length=444, Percent_Identity=27.7027027027027, Blast_Score=131, Evalue=7e-31, Organism=Drosophila melanogaster, GI28574881, Length=446, Percent_Identity=28.0269058295964, Blast_Score=131, Evalue=8e-31, Organism=Drosophila melanogaster, GI24665539, Length=446, Percent_Identity=28.0269058295964, Blast_Score=131, Evalue=8e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR016040 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: NA
Molecular weight: Translated: 44409; Mature: 44278
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAA CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHH ETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPG HHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCC TKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRLPQSVLDAE CCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHH IARIEKMGVTIKCNNEIGKTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFL HHHHHHHCEEEEECCCCCCEEEHHHHHCCCCEEEEEEEECCCCCCCEEECCCHHHHHHHH QRVRQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFAS HHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH ARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELTMAADKIILAVGQHARLDAFAELEQQR HHHHCHHHHCCCCCEEEECCEEEEEEEEECCCEEEHHCEEEEEECCCCCHHHHHHHHHHH NTIKTQNYQIRDPQVFAAGDIVEGDKTVVYAVKTGKEAAEAIHHYLEGACSC HHHCCCCEEECCCCEEEECCEECCCCEEEEEEECCHHHHHHHHHHHHHCCCC >Mature Secondary Structure PQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAA CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHH ETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGMEIYQPG HHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCC TKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRLPQSVLDAE CCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHH IARIEKMGVTIKCNNEIGKTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFL HHHHHHHCEEEEECCCCCCEEEHHHHHCCCCEEEEEEEECCCCCCCEEECCCHHHHHHHH QRVRQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFAS HHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH ARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELTMAADKIILAVGQHARLDAFAELEQQR HHHHCHHHHCCCCCEEEECCEEEEEEEEECCCEEEHHCEEEEEECCCCCHHHHHHHHHHH NTIKTQNYQIRDPQVFAAGDIVEGDKTVVYAVKTGKEAAEAIHHYLEGACSC HHHCCCCEEECCCCEEEECCEECCCCEEEEEEECCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]